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1 <?xml version="1.0" encoding="UTF-8"?>
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2 <tool id="FASTQ_replace_dots_for_N" name="FASTQ_replace_dots_for_N" version="1.0.0.a">
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3 <description>Replace DOTs for Ns in sequences in FASTQ files.</description>
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4
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5 <requirements>
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6 <requirement type="package" version="1.0.0">FASTQ_replace_dots_for_N</requirement>
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7 </requirements>
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8
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9 <command interpreter="python">
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10 FASTQ_replace_dots_for_N.py $input > $output
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11 </command>
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12
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13 <inputs>
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14 <param name="input" type="data" format="fastq" label="Alignment file" help="The input FASTQ file with dots inside the sequences." />
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15 </inputs>
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16
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17 <outputs>
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18 <data format="fastq" name="output" label="${tool.name} on ${input.hid}: ${input.name}" />
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19 </outputs>
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20
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21 <help>
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22 Contact
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23 -------
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24
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25 The tool wrapper has been written by Youri Hoogstrate from the Erasmus
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26 Medical Center (Rotterdam, Netherlands) on behalf of the Translational
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27 Research IT (TraIT) project:
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28
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29 http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch
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30
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31 More tools by the Translational Research IT (TraIT) project can be found
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32 in the following toolsheds:
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33
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34 http://toolshed.dtls.nl/
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35
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36 http://toolshed.g2.bx.psu.edu/
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37
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38 http://testtoolshed.g2.bx.psu.edu/
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39 </help>
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40 </tool> |
