Mercurial > repos > yhoogstrate > edger_with_design_matrix
changeset 116:ed809072dc95 draft
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/edger_with_design_matrix commit 097f2974042345a231e431299a031f236f3eb689-dirty
| author | yhoogstrate |
|---|---|
| date | Tue, 01 Sep 2015 08:05:27 -0400 |
| parents | f06dceb5b966 |
| children | 6df940f979c8 |
| files | edgeR_Differential_Gene_Expression.xml |
| diffstat | 1 files changed, 1 insertions(+), 23 deletions(-) [+] |
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--- a/edgeR_Differential_Gene_Expression.xml Tue Sep 01 08:01:02 2015 -0400 +++ b/edgeR_Differential_Gene_Expression.xml Tue Sep 01 08:05:27 2015 -0400 @@ -609,7 +609,7 @@ Installation ------------ -This tool requires no specific configurations. The following dependencies are installed automatically: +This tool requires no specific configuration. The following dependencies will installed automatically: - R - limma @@ -624,28 +624,6 @@ - edgeR - GPL (>=2) -References ----------- - -EdgeR -^^^^^ -**[1] edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.** - -*Mark D. Robinson, Davis J. McCarthy and Gordon K. Smyth* - Bioinformatics (2010) 26 (1): 139-140. - -- http://www.bioconductor.org/packages/2.12/bioc/html/edgeR.html -- http://dx.doi.org/10.1093/bioinformatics/btp616 -- http://www.bioconductor.org/packages/release/bioc/html/edgeR.html - -Test-data (MCF7) -^^^^^^^^^^^^^^^^ -**[2] RNA-seq differential expression studies: more sequence or more replication?** - -*Yuwen Liu, Jie Zhou and Kevin P. White* - Bioinformatics (2014) 30 (3): 301-304. - -- http://www.ncbi.nlm.nih.gov/pubmed/24319002 -- http://dx.doi.org/10.1093/bioinformatics/btt688 - @CONTACT@ </help>