Mercurial > repos > yhoogstrate > edger_with_design_matrix

changeset 80:c5bd139cd3e8 draft

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Uploaded
author yhoogstrate
date Thu, 13 Nov 2014 10:38:26 -0500
parents c86f1f86b3c1
children 2138cf5f7f0c
files tool_dependencies.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Nov 13 10:30:43 2014 -0500
+++ b/tool_dependencies.xml	Thu Nov 13 10:38:26 2014 -0500
@@ -1,14 +1,14 @@
 <?xml version="1.0"?>
 <tool_dependency>
 	<package name="R" version="3.0.3">
-		<repository changeset_revision="9ff23e0b280b" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /><!-- toolshed="http://testtoolshed.g2.bx.psu.edu/" -->
+		<repository changeset_revision="9ff23e0b280b" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
 	</package>
 	
 	<package name="biocLite_edgeR_limma" version="latest">
 		<install version="1.0"> 
 			<actions>
 				<action type="set_environment_for_install">
-					<repository changeset_revision="9ff23e0b280b" name="package_r_3_0_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"><!-- toolshed="http://testtoolshed.g2.bx.psu.edu/" -->
+					<repository changeset_revision="9ff23e0b280b" name="package_r_3_0_3" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/">
 						<package name="R" version="3.0.3" />
 					</repository>
 					
@@ -30,7 +30,7 @@
 	
 	<!-- instead of using "convert", make use of "gm convert" -->
 	<package name="graphicsmagick" version="1.3.18">
-		<repository changeset_revision="2fd4eb971ba5" name="package_graphicsmagick_1_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /><!-- toolshed="http://testtoolshed.g2.bx.psu.edu/" -->
+		<repository changeset_revision="2fd4eb971ba5" name="package_graphicsmagick_1_3" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
 	</package>
 	
 	<package name="design_matrix_creator" version="1.0.0">
@@ -44,7 +44,7 @@
 					<file mode="755">$INSTALL_DIR/bin/design_matrix_creator</file>
 				</action>
 				<action type="set_environment">
-					<environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
 				</action>
 			</actions>
 		</install>