Mercurial > repos > yhoogstrate > edger_with_design_matrix
changeset 95:9dac2146b98c draft
Uploaded
| author | yhoogstrate |
|---|---|
| date | Sun, 29 Mar 2015 02:41:02 -0400 |
| parents | 46745f5666ac |
| children | aef2ea94533b |
| files | edgeR_Differential_Gene_Expression.xml |
| diffstat | 1 files changed, 2 insertions(+), 19 deletions(-) [+] |
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--- a/edgeR_Differential_Gene_Expression.xml Sat Mar 28 08:09:03 2015 -0400 +++ b/edgeR_Differential_Gene_Expression.xml Sun Mar 29 02:41:02 2015 -0400 @@ -7,8 +7,8 @@ <requirement type="package" version="latest">biocLite_edgeR_limma</requirement> </requirements> - <version_command>R --vanilla --slave -e "library(edgeR) ; cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2> /dev/null</version_command> - + <version_command> + echo $(R --version | grep version | grep -v GNU) " , EdgeR version" $(R --vanilla --slave -e "library(edgeR) ; cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2> /dev/null | grep -v "WARNING: ")</version_command> <command> <!-- The following script is written in the "Cheetah" language: @@ -88,23 +88,6 @@ #else: > /dev/null #end if - - <!-- - 2> stderr.txt ; - - grep -v 'Calculating library sizes from column' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; - - ## Locale error messages: - grep -v 'During startup - Warning messages' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; - grep -v 'Setting LC_TIME failed' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; - grep -v 'Setting LC_MONETARY failed' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; - grep -v 'Setting LC_PAPER failed' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; - grep -v 'Setting LC_MEASUREMENT failed' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; - grep -v 'Setting LC_CTYPE failed' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; - grep -v 'Setting LC_COLLATE failed' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; - - cat stderr.txt >&2 - --> </command> <stdio>