# HG changeset patch
# User yhoogstrate
# Date 1427611262 14400
# Node ID 9dac2146b98c4a55aa440cd5e8af8953b387004a
# Parent  46745f5666acd4deb5e7f350b0c62dfa556431ab
Uploaded

diff -r 46745f5666ac -r 9dac2146b98c edgeR_Differential_Gene_Expression.xml
--- a/edgeR_Differential_Gene_Expression.xml	Sat Mar 28 08:09:03 2015 -0400
+++ b/edgeR_Differential_Gene_Expression.xml	Sun Mar 29 02:41:02 2015 -0400
@@ -7,8 +7,8 @@
 		<requirement type="package" version="latest">biocLite_edgeR_limma</requirement>
 	</requirements>
 	
-	<version_command>R --vanilla --slave -e "library(edgeR) ; cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2&gt; /dev/null</version_command>
-	
+	<version_command>
+		echo $(R --version | grep version | grep -v GNU) " , EdgeR version" $(R --vanilla --slave -e "library(edgeR) ; cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2&gt; /dev/null | grep -v "WARNING: ")</version_command>
 	<command>
 		<!--
 			The following script is written in the "Cheetah" language:
@@ -88,23 +88,6 @@
 			#else:
 				> /dev/null
 			#end if
-			
-			<!--
-			2> stderr.txt ; 
-			
-			grep -v 'Calculating library sizes from column' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; 
-			
-			## Locale error messages:
-			grep -v 'During startup - Warning messages' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; 
-			grep -v 'Setting LC_TIME failed' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; 
-			grep -v 'Setting LC_MONETARY failed' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; 
-			grep -v 'Setting LC_PAPER failed' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; 
-			grep -v 'Setting LC_MEASUREMENT failed' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; 
-			grep -v 'Setting LC_CTYPE failed' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; 
-			grep -v 'Setting LC_COLLATE failed' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ; 
-			
-			cat stderr.txt >&amp;2
-			-->
 	</command>
 	
 	<stdio>