Mercurial > repos > yhoogstrate > edger_with_design_matrix
changeset 69:1dc20e3e11df draft
Uploaded
| author | yhoogstrate |
|---|---|
| date | Tue, 30 Sep 2014 09:23:17 -0400 |
| parents | 718bb1dd0b8a |
| children | fb64bf85361d |
| files | edgeR_Differential_Gene_Expression.xml |
| diffstat | 1 files changed, 18 insertions(+), 1 deletions(-) [+] |
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--- a/edgeR_Differential_Gene_Expression.xml Tue Sep 30 09:09:29 2014 -0400 +++ b/edgeR_Differential_Gene_Expression.xml Tue Sep 30 09:23:17 2014 -0400 @@ -86,8 +86,25 @@ 2> stderr.txt ; #if $output_format_images == "png": - convert $output_format_images "{$output_format_images}.png" ; + echo "Converting PDF figures to PNG" + + convert $output_MDSplot "{$output_MDSplot}.png" ; + convert $output_BCVplot "{$output_BCVplot}.png" ; + convert $output_MAplot "{$output_MAplot}.png" ; + convert $output_PValue_distribution_plot "{$output_PValue_distribution_plot}.png" ; + convert $output_hierarchical_clustering_plot "{$output_hierarchical_clustering_plot}.png" ; + convert $output_heatmap_plot "{$output_heatmap_plot}.png" ; + + mv "{$output_MDSplot}.png" $output_MDSplot ; + mv "{$output_BCVplot}.png" $output_BCVplot ; + mv "{$output_MAplot}.png" $output_MAplot ; + mv "{$output_PValue_distribution_plot}.png" $output_PValue_distribution_plot ; + mv "{$output_hierarchical_clustering_plot}.png" $output_hierarchical_clustering_plot ; + mv "{$output_heatmap_plot}.png" $output_heatmap_plot ; + mv "{$output_format_images}.png" $output_format_images ; + #else: + echo "Format is already in $output_format_images" #end if grep -v 'Calculating library sizes from column' stderr.txt > stderr2.txt ; rm stderr.txt ; mv stderr2.txt stderr.txt ;