Mercurial > repos > yhoogstrate > edger_with_design_matrix

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author yhoogstrate
date Sat, 12 Dec 2015 05:21:15 -0500
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1 EdgeR wrapper for Galaxy
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2 ========================
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4 This is a wrapper for the RNA-Seq differentially gene expression analysis tool EdgeR.
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5 This wrapper contains 2 flavours of tests, a classical 2 group analysis and a more
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6 sophistiacted multi-factor analysis.
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8 Input data can be generated using so called count tools. The wrapper has been written
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9 to be compatible with at least featureCounts (by yhoogstrate) and HTSeq-count (by iuc).
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11 http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
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13 Implementation of EdgeR supporting quite advanced experimental
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14 designs.
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16 Development
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17 -----------
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19 * Repository-Maintainer: Youri Hoogstrate
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21 * Repository-Development: https://github.com/ErasmusMC-Bioinformatics/edger_galaxy_wrapper
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23 The tool wrapper has been written by Youri Hoogstrate from the Erasmus
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24 Medical Center (Rotterdam, Netherlands) on behalf of the Translational
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25 Research IT (TraIT) project:
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27 http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch
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29 More tools by the Translational Research IT (TraIT) project can be found in the following toolsheds:
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31 http://toolshed.g2.bx.psu.edu
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33 http://testtoolshed.g2.bx.psu.edu/
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35 License
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36 -------
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38 **R**:
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40 GPL (>=2): http://www.r-project.org/COPYING
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42 **BioConductor**:
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44 Artistic License 2.0: http://www.bioconductor.org/about/
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46 **EdgeR**:
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48 GPL (>=2)
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50 **This wrapper**:
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52 GPL (>=2)