Mercurial > repos > yhoogstrate > edger_with_design_matrix
diff README.rst @ 119:0a05f6a91d71 draft
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/edger_with_design_matrix commit b3dcbc6b4e0510909aef9969da9941bed18599e6
| author | yhoogstrate |
|---|---|
| date | Thu, 10 Dec 2015 10:34:10 -0500 |
| parents | dfebd3787276 |
| children |
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--- a/README.rst Wed Dec 09 10:42:33 2015 -0500 +++ b/README.rst Thu Dec 10 10:34:10 2015 -0500 @@ -1,6 +1,13 @@ EdgeR wrapper for Galaxy ======================== +This is a wrapper for the RNA-Seq differentially gene expression analysis tool EdgeR. +This wrapper contains 2 flavours of tests, a classical 2 group analysis and a more +sophistiacted multi-factor analysis. + +Input data can be generated using so called count tools. The wrapper has been written +to be compatible with at least featureCounts (by yhoogstrate) and HTSeq-count (by iuc). + http://www.bioconductor.org/packages/release/bioc/html/edgeR.html Implementation of EdgeR supporting quite advanced experimental @@ -42,17 +49,4 @@ **This wrapper**: - Copyright (C) 2013-2015 Youri Hoogstrate - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see <http://www.gnu.org/licenses/>. +GPL (>=2)
