annotate README.rst @ 86:4c0c42dfbb29 draft

Uploaded
author yhoogstrate
date Wed, 19 Nov 2014 09:49:46 -0500
parents 0066a0bfa2b5
children 6be55ae6196c
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
83
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
1 EdgeR wrapper for Galaxy
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
2 ========================
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
3
86
4c0c42dfbb29 Uploaded
yhoogstrate
parents: 85
diff changeset
4 http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
83
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
5
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
6 Implementation of EdgeR supporting quite advanced experimental
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
7 designs.
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
8
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
9 Development
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
10 -----------
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
11
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
12 * Repository-Maintainer: Youri Hoogstrate
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
13
85
0066a0bfa2b5 Uploaded
yhoogstrate
parents: 83
diff changeset
14 * Repository-Development: https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools
0066a0bfa2b5 Uploaded
yhoogstrate
parents: 83
diff changeset
15
83
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
16
86
4c0c42dfbb29 Uploaded
yhoogstrate
parents: 85
diff changeset
17
83
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
18 The tool wrapper has been written by Youri Hoogstrate from the Erasmus
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
19 Medical Center (Rotterdam, Netherlands) on behalf of the Translational
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
20 Research IT (TraIT) project:
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
21
85
0066a0bfa2b5 Uploaded
yhoogstrate
parents: 83
diff changeset
22 http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch
83
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
23
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
24 More tools by the Translational Research IT (TraIT) project can be found in the following repository:
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
25
85
0066a0bfa2b5 Uploaded
yhoogstrate
parents: 83
diff changeset
26 http://toolshed.dtls.nl/
83
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
27
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
28 License
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
29 -------
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
30
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
31 **R**:
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
32
85
0066a0bfa2b5 Uploaded
yhoogstrate
parents: 83
diff changeset
33 http://www.r-project.org/COPYING
83
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
34
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
35 GPL (>=2)
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
36
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
37 **BioConductor**:
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
38
85
0066a0bfa2b5 Uploaded
yhoogstrate
parents: 83
diff changeset
39 http://www.bioconductor.org/about/
83
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
40
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
41 Artistic License 2.0
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
42
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
43 **EdgeR**:
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
44
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
45 GPL (>=2)
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
46
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
47 **This wrapper**:
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
48
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
49 Copyright (C) 2013-2014 Youri Hoogstrate
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
50
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
51 This program is free software: you can redistribute it and/or modify
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
52 it under the terms of the GNU General Public License as published by
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
53 the Free Software Foundation, either version 3 of the License, or
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
54 (at your option) any later version.
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
55
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
56 This program is distributed in the hope that it will be useful,
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
57 but WITHOUT ANY WARRANTY; without even the implied warranty of
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
58 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
59 GNU General Public License for more details.
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
60
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
61 You should have received a copy of the GNU General Public License
b2738b4d7c8c Uploaded
yhoogstrate
parents:
diff changeset
62 along with this program. If not, see <http://www.gnu.org/licenses/>.