Mercurial > repos > yhoogstrate > crossmap

comparison test-data/test_bam_01_output_a.sam @ 13:7e32d2a88c07 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 853297e61ca5fecafe4f09ec449e2731515b32c1-dirty
author yhoogstrate
date Thu, 13 Aug 2015 07:43:24 -0400
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children 263581d4dd90
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12:e83cdc4e56cd 13:7e32d2a88c07
1 @HD VN:1.0 SO:coordinate
2 @SQ SN:chr1 LN:247249719
3 @SQ SN:chr10 LN:135374737
4 @SQ SN:chr2 LN:242951149
5 @SQ SN:chr3 LN:199501827
6 @SQ SN:chr4 LN:191273063
7 @PG ID:- VN:1.0.0 CL:cmatrix
8 @PG ID:CrossMap VN:0.1.10
9 @CO Test data for CrossMap bam
10 @CO Liftover from original BAM/SAM file:
11 @CO Liftover is based on the chain file:
12 read_001 0 chr1 89863 60 50M = 1 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *
13 read_002 0 chr2 90000 60 50M chr1 1 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *
14 read_003 0 chr3 75000 60 50M chr1 1 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *
15 read_006 0 chr1 989863 60 50M = 1 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *
16 read_007 0 chr2 990000 60 50M chr1 1 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *
17 read_008 0 chr3 975000 60 50M chr1 1 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *
18 read_011 16 chr1 89863 60 50M = 1 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *
19 read_012 16 chr2 90000 60 50M chr1 1 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *
20 read_013 16 chr3 75000 60 50M chr1 1 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *
21 read_016 16 chr1 989863 60 50M = 1 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *
22 read_017 16 chr2 990000 60 50M chr1 1 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *
23 read_018 16 chr3 975000 60 50M chr1 1 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *