Mercurial > repos > yboursin > rsem_eba

changeset 4:c29f1fd1c8b6 draft default tip

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pme didn't work when not switching to fullset
author yboursin
date Fri, 21 Oct 2016 09:46:59 -0400
parents e5c7c06fd762
children
files rsem_calculate_expression.xml
diffstat 1 files changed, 2 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/rsem_calculate_expression.xml	Fri Oct 21 09:00:47 2016 -0400
+++ b/rsem_calculate_expression.xml	Fri Oct 21 09:46:59 2016 -0400
@@ -38,9 +38,9 @@
         --calc-ci
         --ci-memory 2048
       #end if
+      ## Calculate PME
+      $rsem_options.pme
     #end if
-    ## Calculate PME
-    $rsem_options.pme
     --num-threads \${GALAXY_SLOTS:-4}
     #if str($input.usebowtie.bowtie) == "one":
      #if $input.format != 'bam' and $input.usebowtie.bowtie_options.fullparams == 'fullset':
@@ -153,7 +153,6 @@
                 <option value="no" selected="true">no</option>
                 <option value="yes">yes</option>
               </param>
-            
             <param name="pme" type="boolean" truevalue="--calc-pme" falsevalue="" label="Calculate posterior mean estimates ? (collapsed Gibbs sampler)" />
           </when>
         </conditional>