# HG changeset patch
# User yboursin
# Date 1477057619 14400
# Node ID c29f1fd1c8b6380554420846dc0a8830f32d1ed3
# Parent  e5c7c06fd7625b1688e00e1c366946c452e927e8
pme didn't work when not switching to fullset

diff -r e5c7c06fd762 -r c29f1fd1c8b6 rsem_calculate_expression.xml
--- a/rsem_calculate_expression.xml	Fri Oct 21 09:00:47 2016 -0400
+++ b/rsem_calculate_expression.xml	Fri Oct 21 09:46:59 2016 -0400
@@ -38,9 +38,9 @@
         --calc-ci
         --ci-memory 2048
       #end if
+      ## Calculate PME
+      $rsem_options.pme
     #end if
-    ## Calculate PME
-    $rsem_options.pme
     --num-threads \${GALAXY_SLOTS:-4}
     #if str($input.usebowtie.bowtie) == "one":
      #if $input.format != 'bam' and $input.usebowtie.bowtie_options.fullparams == 'fullset':
@@ -153,7 +153,6 @@
                 <option value="no" selected="true">no</option>
                 <option value="yes">yes</option>
               </param>
-            
             <param name="pme" type="boolean" truevalue="--calc-pme" falsevalue="" label="Calculate posterior mean estimates ? (collapsed Gibbs sampler)" />
           </when>
         </conditional>