Mercurial > repos > yating-l > ucsc_blat
changeset 23:1d17fb76718e draft
planemo upload commit c6e5cf60eae0c793f7186b7414a0714a14f5c0e7-dirty
author | yating-l |
---|---|
date | Tue, 23 May 2017 18:27:21 -0400 |
parents | 93159496f9c0 |
children | 4faaa87eca43 |
files | blat.xml tool_dependencies.xml |
diffstat | 2 files changed, 32 insertions(+), 5 deletions(-) [+] |
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--- a/blat.xml Tue May 23 18:21:27 2017 -0400 +++ b/blat.xml Tue May 23 18:27:21 2017 -0400 @@ -1,8 +1,8 @@ <?xml version="1.0"?> -<tool id="ucsc_blat" name="UCSC BLAT Alignment Tool" version="35-0"> +<tool id="ucsc_blat" name="UCSC BLAT Alignment Tool" version="1.0"> <description>Standalone blat sequence search command line tool</description> <requirements> - <requirement type="package" version="35">blat</requirement> + <requirement type="package" version="1.0">ucsc_tools_340_for_BLAT</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ #if str($reference_source.reference_source_selector) == "history": @@ -152,9 +152,9 @@ http://hgdownload.cse.ucsc.edu/admin/exe/ ]]></help> - <citations> - <citation type="doi">10.1101/gr.229202</citation> - </citations> +<citations> + <citation type="doi">10.1101/gr.229202</citation> +</citations> </tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue May 23 18:27:21 2017 -0400 @@ -0,0 +1,27 @@ +<?xml version="1.0"?> +<tool_dependency> + <!-- required tools: + - blat + - sort + - pslReps + - faPolyASizes + - pslCDnaFilter + --> + <package name="ucsc_tools_340_for_BLAT" version="1.0"> + <install version="1.0"> + <actions_group> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/package_ucsc_tools_340_for_BLAT.tar.gz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + </actions> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions_group> + </install> + <readme>The tools and utilities were created by the UCSC Genome Bioinformatics Group</readme> + </package> +</tool_dependency> \ No newline at end of file