Mercurial > repos > yating-l > twobit_info_340
changeset 1:1c9fa1af931b draft default tip
planemo upload
| author | yating-l |
|---|---|
| date | Tue, 16 May 2017 15:24:38 -0400 |
| parents | 4dfdf2090b35 |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 2 insertions(+), 53 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue May 16 15:10:47 2017 -0400 +++ b/tool_dependencies.xml Tue May 16 15:24:38 2017 -0400 @@ -1,57 +1,6 @@ -<?xml version="1.0" ?> +<?xml version="1.0"?> <tool_dependency> <package name="ucsc_twobit" version="340"> - <install version="1.0"> - <actions_group> - <actions os="darwin" architecture="x86_64"> - <action type="download_by_url" - sha256sum="aa0df6fc9c5dfe83cb94456e1100a5ecd7a247e7521d91f4e91c46c1b21fc9ab"> - http://old-gep.wustl.edu/~wilson/packages/ucsc_twobit/ucsc_twobit_340_macOS_x86_64.tar.gz - </action> - <action type="move_directory_files"> - <source_directory>bin</source_directory> - <destination_directory>$INSTALL_DIR/bin</destination_directory> - </action> - </actions> - - <actions os="linux" architecture="x86_64"> - <action type="download_by_url" - sha256sum="31b18fd6f0f24981815ded0a1790be49ca47a5d2cce40c3af29ffc6f5bea4922"> - http://old-gep.wustl.edu/~wilson/packages/ucsc_twobit/ucsc_twobit_340_linux_x86_64.tar.gz - </action> - <action type="move_directory_files"> - <source_directory>bin</source_directory> - <destination_directory>$INSTALL_DIR/bin</destination_directory> - </action> - </actions> - - <!-- Display error message for unsupported OS and CPU architecture --> - <actions> - <action type="shell_command"> - echo "ERROR: This package only supports 64-bit systems running macOS or Linux" - </action> - <action type="shell_command">false</action> - </actions> - - <!-- update $PATH environment variable --> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> - </action> - </actions_group> - </install> - <readme> - <![CDATA[ - This package contains the utilities for constructing and manipulating - `twoBit files <https://genome.ucsc.edu/goldenpath/help/twoBit.html>`_. - The utilities were created by the - `Genome Bioinformatics Group <https://genome.ucsc.edu/staff.html>`_ - at the UCSC Genomics Institute. - - The twoBit file format is designed to store genomic sequences and the - associated repeat masking information. The twoBit file is used by the - UCSC Genome Browser and by tools such as - `BLAT <https://genome.ucsc.edu/goldenpath/help/blatSpec.html>`_. - ]]> - </readme> + <repository changeset_revision="2b2793470ce4" name="package_ucsc_twobit_340" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>