Mercurial > repos > yating-l > snap
changeset 7:eba88632a533 draft
planemo upload commit 0ba99fe246099cc1827f71f2722d253becee64ba
| author | yating-l |
|---|---|
| date | Thu, 21 Jul 2016 17:17:30 -0400 |
| parents | 3e3374605b6d |
| children | 7107b7be52da |
| files | snap.xml tool_dependencies.xml |
| diffstat | 2 files changed, 20 insertions(+), 2 deletions(-) [+] |
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--- a/snap.xml Thu Jul 21 14:30:47 2016 -0400 +++ b/snap.xml Thu Jul 21 17:17:30 2016 -0400 @@ -6,7 +6,7 @@ <exit_code range="1:" /> </stdio> <command><![CDATA[ - $SNAP_PATH/snap + snap #if $settings.advanced == "advanced" $settings.lcmask #if $settings.strand == "true"
--- a/tool_dependencies.xml Thu Jul 21 14:30:47 2016 -0400 +++ b/tool_dependencies.xml Thu Jul 21 17:17:30 2016 -0400 @@ -1,6 +1,24 @@ <?xml version="1.0"?> <tool_dependency> <package name="snap" version="0.1.0"> - <repository changeset_revision="8896a0891e9b" name="package_snap_0_1_0" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <install version="0.1.0"> + <actions> + <action type="download_by_url">http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz</action> + <action type="shell_command">rm snap-2013-11-29.tar.gz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="shell_command">make</action> + <action type="set_environment"> + <environment_variable name="ZOE" action="set_to">$INSTALL_DIR</environment_variable> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme>SNAP is a general purpose gene finding program suitable for both eukaryotic + and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid + Parser. + </readme> </package> </tool_dependency>