Mercurial > repos > yating-l > snap
changeset 24:9a7a53f902e7 draft
planemo upload commit 912f9f63cf6961808344617d270789903e650025-dirty
| author | yating-l |
|---|---|
| date | Sat, 13 Aug 2016 14:45:09 -0400 |
| parents | ba64ea834baf |
| children | cf05d455fe47 |
| files | error.txt out snap.xml test-data/thale.gff test.txt |
| diffstat | 5 files changed, 1 insertions(+), 54 deletions(-) [+] |
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--- a/error.txt Fri Aug 12 18:57:05 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -scoring.....decoding.10.20.30.40.50.60.70.80.90.100 done -scoring.....decoding.10.20.30.40.50.60.70.80.90.100 done
--- a/out Fri Aug 12 18:57:05 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -scoring.....decoding.10.20.30.40.50.60.70.80.90.100 done -scoring.....decoding.10.20.30.40.50.60.70.80.90.100 done
--- a/snap.xml Fri Aug 12 18:57:05 2016 -0400 +++ b/snap.xml Sat Aug 13 14:45:09 2016 -0400 @@ -57,7 +57,7 @@ <option value="Os.hmm">Os</option> </param> <param name="proteins" type="select" label="Create FASTA file of proteins"> - <option value=>No</option> + <option value="">No</option> <option value="-aa">Yes</option> </param> <param name="transcripts" type="select" label="Create FASTA file of transcripts">
--- a/test-data/thale.gff Fri Aug 12 18:57:05 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,22 +0,0 @@ -At1g01040.0 SNAP Einit 1007 1954 85.269 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Exon 2024 2137 8.926 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Exon 2234 2444 20.788 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Exon 2523 2917 35.162 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Exon 3006 3225 34.428 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Exon 3307 3479 14.790 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Exon 3563 3685 4.678 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Exon 3774 3934 10.179 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Exon 4025 4258 25.991 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Exon 4344 4506 4.289 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Exon 4581 4763 28.696 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Exon 4854 5015 15.217 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Exon 5100 5195 23.205 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Eterm 5285 5917 45.878 + . At1g01040.0-snap.1 -At1g01040.0 SNAP Einit 6086 6144 6.596 + . At1g01040.0-snap.2 -At1g01040.0 SNAP Exon 6190 6287 22.495 + . At1g01040.0-snap.2 -At1g01040.0 SNAP Exon 6372 6562 17.809 + . At1g01040.0-snap.2 -At1g01040.0 SNAP Exon 6642 6803 16.407 + . At1g01040.0-snap.2 -At1g01040.0 SNAP Exon 6828 7547 69.159 + . At1g01040.0-snap.2 -At1g01040.0 SNAP Exon 7629 7793 40.262 + . At1g01040.0-snap.2 -At1g01040.0 SNAP Exon 7892 8298 46.310 + . At1g01040.0-snap.2 -At1g01040.0 SNAP Eterm 8384 8561 17.079 + . At1g01040.0-snap.2
--- a/test.txt Fri Aug 12 18:57:05 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,27 +0,0 @@ -##gff-version 3 -At1g01040.0 SNAP gene 1007 5917 . + . ID=At1g01040.0-snap.1 -At1g01040.0 SNAP mRNA 1007 5917 . + . ID=mRNA_At1g01040.0-snap.1;Parent=At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 1007 1954 85.269 + 0 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 2024 2137 8.926 + 0 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 2234 2444 20.788 + 0 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 2523 2917 35.162 + 2 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 3006 3225 34.428 + 0 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 3307 3479 14.790 + 2 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 3563 3685 4.678 + 0 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 3774 3934 10.179 + 0 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 4025 4258 25.991 + 1 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 4344 4506 4.289 + 1 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 4581 4763 28.696 + 0 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 4854 5015 15.217 + 0 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 5100 5195 23.205 + 0 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP CDS 5285 5917 45.878 + 0 Parent=mRNA_At1g01040.0-snap.1 -At1g01040.0 SNAP gene 6086 8561 . + . ID=At1g01040.0-snap.2 -At1g01040.0 SNAP mRNA 6086 8561 . + . ID=mRNA_At1g01040.0-snap.2;Parent=At1g01040.0-snap.2 -At1g01040.0 SNAP CDS 6086 6144 6.596 + 0 Parent=mRNA_At1g01040.0-snap.2 -At1g01040.0 SNAP CDS 6190 6287 22.495 + 1 Parent=mRNA_At1g01040.0-snap.2 -At1g01040.0 SNAP CDS 6372 6562 17.809 + 2 Parent=mRNA_At1g01040.0-snap.2 -At1g01040.0 SNAP CDS 6642 6803 16.407 + 0 Parent=mRNA_At1g01040.0-snap.2 -At1g01040.0 SNAP CDS 6828 7547 69.159 + 0 Parent=mRNA_At1g01040.0-snap.2 -At1g01040.0 SNAP CDS 7629 7793 40.262 + 0 Parent=mRNA_At1g01040.0-snap.2 -At1g01040.0 SNAP CDS 7892 8298 46.310 + 0 Parent=mRNA_At1g01040.0-snap.2 -At1g01040.0 SNAP CDS 8384 8561 17.079 + 1 Parent=mRNA_At1g01040.0-snap.2