Mercurial > repos > yating-l > jbrowsearchivecreator
changeset 18:466d52f83079 draft
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 594c5fa1e3cdb378ecf6b5490ec2cbac5fa8a61e-dirty
| author | yating-l |
|---|---|
| date | Thu, 06 Jul 2017 15:24:29 -0400 |
| parents | 74328b550a92 |
| children | df2a55f071fc |
| files | TrackHub.py bedToGff3.py |
| diffstat | 2 files changed, 6 insertions(+), 1 deletions(-) [+] |
line wrap: on
line diff
--- a/TrackHub.py Wed Jul 05 16:07:45 2017 -0400 +++ b/TrackHub.py Thu Jul 06 15:24:29 2017 -0400 @@ -154,7 +154,7 @@ if track['dataType'] == 'blastxml': metadata['type'] = "G-OnRamp_plugin/BlastAlignment" if track['dataType'] == 'bigpsl': - metadata['type'] = "G-OnRamp_plugin/BlastAlignment" + metadata['type'] = "G-OnRamp_plugin/BlatAlignment" elif track['dataType'] == 'gff3_transcript' or track['dataType'] == 'gff3_mrna': metadata['type'] = "G-OnRamp_plugin/GenePred" else:
--- a/bedToGff3.py Wed Jul 05 16:07:45 2017 -0400 +++ b/bedToGff3.py Thu Jul 06 15:24:29 2017 -0400 @@ -121,6 +121,11 @@ attribute['blockcount'] = li[9] attribute['blocksizes'] = li[10] attribute['chromstarts'] = li[11] + attribute['ochrom_start'] = li[12] + attribute['ochrom_end'] = li[13] + attribute['ochrom_strand'] = li[14] + attribute['ochrom_size'] = li[15] + attribute['ochrom_starts'] = li[16] attribute['sequence on other chromosome'] = li[17] attribute['cds in ncbi format'] = li[18] attribute['size of target chromosome'] = li[19]