# HG changeset patch
# User yating-l
# Date 1499369069 14400
# Node ID 466d52f83079ec5010c91eef02245c6259e14a80
# Parent  74328b550a924e60ababbbb55d712fde2e0c4c7a
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 594c5fa1e3cdb378ecf6b5490ec2cbac5fa8a61e-dirty

diff -r 74328b550a92 -r 466d52f83079 TrackHub.py
--- a/TrackHub.py	Wed Jul 05 16:07:45 2017 -0400
+++ b/TrackHub.py	Thu Jul 06 15:24:29 2017 -0400
@@ -154,7 +154,7 @@
         if track['dataType'] == 'blastxml':
             metadata['type'] = "G-OnRamp_plugin/BlastAlignment"
         if track['dataType'] == 'bigpsl':
-            metadata['type'] = "G-OnRamp_plugin/BlastAlignment"
+            metadata['type'] = "G-OnRamp_plugin/BlatAlignment"
         elif track['dataType'] == 'gff3_transcript' or track['dataType'] == 'gff3_mrna':
             metadata['type'] = "G-OnRamp_plugin/GenePred"
         else:
diff -r 74328b550a92 -r 466d52f83079 bedToGff3.py
--- a/bedToGff3.py	Wed Jul 05 16:07:45 2017 -0400
+++ b/bedToGff3.py	Thu Jul 06 15:24:29 2017 -0400
@@ -121,6 +121,11 @@
                 attribute['blockcount'] = li[9]
                 attribute['blocksizes'] = li[10]
                 attribute['chromstarts'] = li[11]
+                attribute['ochrom_start'] = li[12]
+                attribute['ochrom_end'] = li[13]
+                attribute['ochrom_strand'] = li[14]
+                attribute['ochrom_size'] = li[15]
+                attribute['ochrom_starts'] = li[16]
                 attribute['sequence on other chromosome'] = li[17]
                 attribute['cds in ncbi format'] = li[18]
                 attribute['size of target chromosome'] = li[19]