view spliceJunctions.as @ 50:804e7217f27c draft default tip

planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 3afab1eb0da4823419945c523a1d37cd5973e7f6-dirty

table spliceJunctions
"Predicted splice junctions"
    (
    string chrom;      "Reference sequence chromosome or scaffold"
    uint   chromStart; "Start position in chromosome"
    uint   chromEnd;   "End position in chromosome"
    string name;       "Name of item"
    uint   score;      "Score from 0-1000"
    char[1] strand;    "+ or -"
    uint thickStart;   "Start of where display should be thick (start codon)"
    uint thickEnd;     "End of where display should be thick (stop codon)"
    uint reserved;     "Used as itemRgb as of 2004-11-22"
    int blockCount;    "Number of blocks"
    int[blockCount] blockSizes; "Comma separated list of block sizes"
    int[blockCount] chromStarts; "Start positions relative to chromStart"
    uint junctionScore;   "Number of reads supporting the splice junction"
    )