Mercurial > repos > yating-l > jbrowsearchivecreator

diff tracks/CanvasFeatures.py @ 41:627cce51523f draft

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planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 2285eddcfe689d70d89571a045f204b74cc6890c-dirty
author yating-l
date Sat, 28 Apr 2018 23:59:31 -0400
parents 4a69515eed63
children 061da5d3a219
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--- a/tracks/CanvasFeatures.py	Fri Apr 20 12:29:32 2018 -0400
+++ b/tracks/CanvasFeatures.py	Sat Apr 28 23:59:31 2018 -0400
@@ -24,7 +24,10 @@
         track['type'] = 'JBrowse/View/Track/' + self.trackType
         track['storeClass'] = 'JBrowse/Store/SeqFeature/GFF3Tabix'
         if self.dataType == 'gff':
+            # need .gff3.gz extension to index the name of the track with generate-name.pl
             track['urlTemplate'] = os.path.join('tracks', self.trackName + '.gff3.gz')
+            # needed to show match_part in Blat and Blast alignment as subfeatures
+            track['glyph'] = "JBrowse/View/FeatureGlyph/Segments"
         else:
             track['urlTemplate'] = os.path.join('tracks', self.trackName)
         track['label'] = self.trackLabel