Mercurial > repos > yating-l > jbrowsearchivecreator

comparison tracks/CanvasFeatures.py @ 41:627cce51523f draft

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planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 2285eddcfe689d70d89571a045f204b74cc6890c-dirty
author yating-l
date Sat, 28 Apr 2018 23:59:31 -0400
parents 4a69515eed63
children 061da5d3a219
comparison
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40:b1553f2a4942 41:627cce51523f
22 self.extraSettings['style']['color'] = self.extraSettings['color'] 22 self.extraSettings['style']['color'] = self.extraSettings['color']
23 track = dict() 23 track = dict()
24 track['type'] = 'JBrowse/View/Track/' + self.trackType 24 track['type'] = 'JBrowse/View/Track/' + self.trackType
25 track['storeClass'] = 'JBrowse/Store/SeqFeature/GFF3Tabix' 25 track['storeClass'] = 'JBrowse/Store/SeqFeature/GFF3Tabix'
26 if self.dataType == 'gff': 26 if self.dataType == 'gff':
27 # need .gff3.gz extension to index the name of the track with generate-name.pl
27 track['urlTemplate'] = os.path.join('tracks', self.trackName + '.gff3.gz') 28 track['urlTemplate'] = os.path.join('tracks', self.trackName + '.gff3.gz')
29 # needed to show match_part in Blat and Blast alignment as subfeatures
30 track['glyph'] = "JBrowse/View/FeatureGlyph/Segments"
28 else: 31 else:
29 track['urlTemplate'] = os.path.join('tracks', self.trackName) 32 track['urlTemplate'] = os.path.join('tracks', self.trackName)
30 track['label'] = self.trackLabel 33 track['label'] = self.trackLabel
31 track['category'] = self.extraSettings['category'] 34 track['category'] = self.extraSettings['category']
32 track['style'] = self.extraSettings['style'] 35 track['style'] = self.extraSettings['style']