diff tracks/CanvasFeatures.py @ 39:4a69515eed63 draft

planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 91271a6c0d39c923f0d460b2979247baa297286b-dirty

--- a/tracks/CanvasFeatures.py	Fri Apr 06 13:44:56 2018 -0400
+++ b/tracks/CanvasFeatures.py	Fri Apr 13 18:21:35 2018 -0400
@@ -23,30 +23,13 @@
         track = dict()
         track['type'] = 'JBrowse/View/Track/' + self.trackType
         track['storeClass'] = 'JBrowse/Store/SeqFeature/GFF3Tabix'
-        track['urlTemplate'] = os.path.join('tracks', self.trackName)
+        if self.dataType == 'gff':
+            track['urlTemplate'] = os.path.join('tracks', self.trackName + '.gff3.gz')
+        else:
+            track['urlTemplate'] = os.path.join('tracks', self.trackName)
         track['label'] = self.trackLabel
         track['category'] = self.extraSettings['category']
         track['style'] = self.extraSettings['style']
         extraConfigs = track
         return extraConfigs
 
-    # def prepareExtraSetting(self):
-    #     """ set CanvasFeatures configuration options """
-    #     extraConfigs = dict()
-    #     self.extraSettings["clientConfig"] = dict()
-    #     self.extraSettings["config"] = dict()
-    #     if 'color' not in self.extraSettings or not self.extraSettings['color']:
-    #         self.extraSettings["clientConfig"]['color'] = "#daa520"
-    #     else:
-    #         self.extraSettings["clientConfig"]['color'] = self.extraSettings['color']
-    #     if 'category' not in self.extraSettings or not self.extraSettings['category']:
-    #         self.extraSettings["config"]['category'] = "Default group"
-    #     else:
-    #         self.extraSettings["config"]['category'] = self.extraSettings['category']
-    #     if 'glyph' in self.extraSettings:
-    #         self.extraSettings["config"]['glyph'] = self.extraSettings['glyph']
-    #     if 'transcriptType' in self.extraSettings:
-    #         self.extraSettings['config']['transcriptType'] = self.extraSettings['transcriptType']
-    #     extraConfigs["config"] = json.dumps(self.extraSettings["config"])
-    #     extraConfigs["clientConfig"] = json.dumps(self.extraSettings["clientConfig"])
-    #     return extraConfigs
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