Mercurial > repos > yating-l > jbrowsearchivecreator

comparison tracks/CanvasFeatures.py @ 39:4a69515eed63 draft

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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 91271a6c0d39c923f0d460b2979247baa297286b-dirty
author yating-l
date Fri, 13 Apr 2018 18:21:35 -0400
parents d17f629f5486
children 627cce51523f
comparison
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38:d17f629f5486 39:4a69515eed63
21 else: 21 else:
22 self.extraSettings['style']['color'] = self.extraSettings['color'] 22 self.extraSettings['style']['color'] = self.extraSettings['color']
23 track = dict() 23 track = dict()
24 track['type'] = 'JBrowse/View/Track/' + self.trackType 24 track['type'] = 'JBrowse/View/Track/' + self.trackType
25 track['storeClass'] = 'JBrowse/Store/SeqFeature/GFF3Tabix' 25 track['storeClass'] = 'JBrowse/Store/SeqFeature/GFF3Tabix'
26 track['urlTemplate'] = os.path.join('tracks', self.trackName) 26 if self.dataType == 'gff':
27 track['urlTemplate'] = os.path.join('tracks', self.trackName + '.gff3.gz')
28 else:
29 track['urlTemplate'] = os.path.join('tracks', self.trackName)
27 track['label'] = self.trackLabel 30 track['label'] = self.trackLabel
28 track['category'] = self.extraSettings['category'] 31 track['category'] = self.extraSettings['category']
29 track['style'] = self.extraSettings['style'] 32 track['style'] = self.extraSettings['style']
30 extraConfigs = track 33 extraConfigs = track
31 return extraConfigs 34 return extraConfigs
32 35
33 # def prepareExtraSetting(self):
34 # """ set CanvasFeatures configuration options """
35 # extraConfigs = dict()
36 # self.extraSettings["clientConfig"] = dict()
37 # self.extraSettings["config"] = dict()
38 # if 'color' not in self.extraSettings or not self.extraSettings['color']:
39 # self.extraSettings["clientConfig"]['color'] = "#daa520"
40 # else:
41 # self.extraSettings["clientConfig"]['color'] = self.extraSettings['color']
42 # if 'category' not in self.extraSettings or not self.extraSettings['category']:
43 # self.extraSettings["config"]['category'] = "Default group"
44 # else:
45 # self.extraSettings["config"]['category'] = self.extraSettings['category']
46 # if 'glyph' in self.extraSettings:
47 # self.extraSettings["config"]['glyph'] = self.extraSettings['glyph']
48 # if 'transcriptType' in self.extraSettings:
49 # self.extraSettings['config']['transcriptType'] = self.extraSettings['transcriptType']
50 # extraConfigs["config"] = json.dumps(self.extraSettings["config"])
51 # extraConfigs["clientConfig"] = json.dumps(self.extraSettings["clientConfig"])
52 # return extraConfigs