Mercurial > repos > yating-l > jbrowsearchivecreator
annotate test/lib/python2.7/warnings.py @ 3:7d1a9a91b989 draft
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
| author | yating-l | 
|---|---|
| date | Thu, 18 May 2017 18:37:28 -0400 | 
| parents | |
| children | 
| rev | line source | 
|---|---|
| 3 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 1 """Python part of the warnings subsystem.""" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 2 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 3 # Note: function level imports should *not* be used | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 4 # in this module as it may cause import lock deadlock. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 5 # See bug 683658. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 6 import linecache | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 7 import sys | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 8 import types | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 9 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 10 __all__ = ["warn", "warn_explicit", "showwarning", | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 11 "formatwarning", "filterwarnings", "simplefilter", | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 12 "resetwarnings", "catch_warnings"] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 13 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 14 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 15 def warnpy3k(message, category=None, stacklevel=1): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 16 """Issue a deprecation warning for Python 3.x related changes. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 17 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 18 Warnings are omitted unless Python is started with the -3 option. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 19 """ | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 20 if sys.py3kwarning: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 21 if category is None: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 22 category = DeprecationWarning | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 23 warn(message, category, stacklevel+1) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 24 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 25 def _show_warning(message, category, filename, lineno, file=None, line=None): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 26 """Hook to write a warning to a file; replace if you like.""" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 27 if file is None: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 28 file = sys.stderr | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 29 if file is None: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 30 # sys.stderr is None - warnings get lost | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 31 return | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 32 try: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 33 file.write(formatwarning(message, category, filename, lineno, line)) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 34 except (IOError, UnicodeError): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 35 pass # the file (probably stderr) is invalid - this warning gets lost. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 36 # Keep a working version around in case the deprecation of the old API is | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 37 # triggered. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 38 showwarning = _show_warning | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 39 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 40 def formatwarning(message, category, filename, lineno, line=None): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 41 """Function to format a warning the standard way.""" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 42 try: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 43 unicodetype = unicode | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 44 except NameError: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 45 unicodetype = () | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 46 try: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 47 message = str(message) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 48 except UnicodeEncodeError: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 49 pass | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 50 s = "%s: %s: %s\n" % (lineno, category.__name__, message) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 51 line = linecache.getline(filename, lineno) if line is None else line | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 52 if line: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 53 line = line.strip() | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 54 if isinstance(s, unicodetype) and isinstance(line, str): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 55 line = unicode(line, 'latin1') | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 56 s += " %s\n" % line | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 57 if isinstance(s, unicodetype) and isinstance(filename, str): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 58 enc = sys.getfilesystemencoding() | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 59 if enc: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 60 try: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 61 filename = unicode(filename, enc) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 62 except UnicodeDecodeError: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 63 pass | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 64 s = "%s:%s" % (filename, s) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 65 return s | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 66 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 67 def filterwarnings(action, message="", category=Warning, module="", lineno=0, | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 68 append=0): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 69 """Insert an entry into the list of warnings filters (at the front). | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 70 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 71 'action' -- one of "error", "ignore", "always", "default", "module", | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 72 or "once" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 73 'message' -- a regex that the warning message must match | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 74 'category' -- a class that the warning must be a subclass of | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 75 'module' -- a regex that the module name must match | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 76 'lineno' -- an integer line number, 0 matches all warnings | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 77 'append' -- if true, append to the list of filters | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 78 """ | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 79 import re | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 80 assert action in ("error", "ignore", "always", "default", "module", | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 81 "once"), "invalid action: %r" % (action,) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 82 assert isinstance(message, basestring), "message must be a string" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 83 assert isinstance(category, (type, types.ClassType)), \ | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 84 "category must be a class" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 85 assert issubclass(category, Warning), "category must be a Warning subclass" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 86 assert isinstance(module, basestring), "module must be a string" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 87 assert isinstance(lineno, int) and lineno >= 0, \ | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 88 "lineno must be an int >= 0" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 89 item = (action, re.compile(message, re.I), category, | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 90 re.compile(module), lineno) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 91 if append: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 92 filters.append(item) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 93 else: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 94 filters.insert(0, item) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 95 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 96 def simplefilter(action, category=Warning, lineno=0, append=0): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 97 """Insert a simple entry into the list of warnings filters (at the front). | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 98 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 99 A simple filter matches all modules and messages. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 100 'action' -- one of "error", "ignore", "always", "default", "module", | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 101 or "once" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 102 'category' -- a class that the warning must be a subclass of | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 103 'lineno' -- an integer line number, 0 matches all warnings | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 104 'append' -- if true, append to the list of filters | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 105 """ | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 106 assert action in ("error", "ignore", "always", "default", "module", | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 107 "once"), "invalid action: %r" % (action,) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 108 assert isinstance(lineno, int) and lineno >= 0, \ | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 109 "lineno must be an int >= 0" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 110 item = (action, None, category, None, lineno) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 111 if append: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 112 filters.append(item) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 113 else: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 114 filters.insert(0, item) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 115 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 116 def resetwarnings(): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 117 """Clear the list of warning filters, so that no filters are active.""" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 118 filters[:] = [] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 119 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 120 class _OptionError(Exception): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 121 """Exception used by option processing helpers.""" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 122 pass | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 123 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 124 # Helper to process -W options passed via sys.warnoptions | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 125 def _processoptions(args): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 126 for arg in args: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 127 try: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 128 _setoption(arg) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 129 except _OptionError, msg: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 130 print >>sys.stderr, "Invalid -W option ignored:", msg | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 131 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 132 # Helper for _processoptions() | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 133 def _setoption(arg): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 134 import re | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 135 parts = arg.split(':') | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 136 if len(parts) > 5: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 137 raise _OptionError("too many fields (max 5): %r" % (arg,)) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 138 while len(parts) < 5: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 139 parts.append('') | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 140 action, message, category, module, lineno = [s.strip() | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 141 for s in parts] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 142 action = _getaction(action) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 143 message = re.escape(message) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 144 category = _getcategory(category) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 145 module = re.escape(module) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 146 if module: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 147 module = module + '$' | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 148 if lineno: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 149 try: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 150 lineno = int(lineno) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 151 if lineno < 0: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 152 raise ValueError | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 153 except (ValueError, OverflowError): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 154 raise _OptionError("invalid lineno %r" % (lineno,)) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 155 else: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 156 lineno = 0 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 157 filterwarnings(action, message, category, module, lineno) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 158 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 159 # Helper for _setoption() | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 160 def _getaction(action): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 161 if not action: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 162 return "default" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 163 if action == "all": return "always" # Alias | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 164 for a in ('default', 'always', 'ignore', 'module', 'once', 'error'): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 165 if a.startswith(action): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 166 return a | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 167 raise _OptionError("invalid action: %r" % (action,)) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 168 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 169 # Helper for _setoption() | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 170 def _getcategory(category): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 171 import re | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 172 if not category: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 173 return Warning | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 174 if re.match("^[a-zA-Z0-9_]+$", category): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 175 try: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 176 cat = eval(category) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 177 except NameError: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 178 raise _OptionError("unknown warning category: %r" % (category,)) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 179 else: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 180 i = category.rfind(".") | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 181 module = category[:i] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 182 klass = category[i+1:] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 183 try: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 184 m = __import__(module, None, None, [klass]) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 185 except ImportError: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 186 raise _OptionError("invalid module name: %r" % (module,)) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 187 try: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 188 cat = getattr(m, klass) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 189 except AttributeError: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 190 raise _OptionError("unknown warning category: %r" % (category,)) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 191 if not issubclass(cat, Warning): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 192 raise _OptionError("invalid warning category: %r" % (category,)) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 193 return cat | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 194 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 195 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 196 # Code typically replaced by _warnings | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 197 def warn(message, category=None, stacklevel=1): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 198 """Issue a warning, or maybe ignore it or raise an exception.""" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 199 # Check if message is already a Warning object | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 200 if isinstance(message, Warning): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 201 category = message.__class__ | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 202 # Check category argument | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 203 if category is None: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 204 category = UserWarning | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 205 assert issubclass(category, Warning) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 206 # Get context information | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 207 try: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 208 caller = sys._getframe(stacklevel) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 209 except ValueError: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 210 globals = sys.__dict__ | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 211 lineno = 1 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 212 else: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 213 globals = caller.f_globals | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 214 lineno = caller.f_lineno | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 215 if '__name__' in globals: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 216 module = globals['__name__'] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 217 else: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 218 module = "<string>" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 219 filename = globals.get('__file__') | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 220 if filename: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 221 fnl = filename.lower() | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 222 if fnl.endswith((".pyc", ".pyo")): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 223 filename = filename[:-1] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 224 else: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 225 if module == "__main__": | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 226 try: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 227 filename = sys.argv[0] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 228 except AttributeError: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 229 # embedded interpreters don't have sys.argv, see bug #839151 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 230 filename = '__main__' | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 231 if not filename: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 232 filename = module | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 233 registry = globals.setdefault("__warningregistry__", {}) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 234 warn_explicit(message, category, filename, lineno, module, registry, | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 235 globals) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 236 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 237 def warn_explicit(message, category, filename, lineno, | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 238 module=None, registry=None, module_globals=None): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 239 lineno = int(lineno) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 240 if module is None: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 241 module = filename or "<unknown>" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 242 if module[-3:].lower() == ".py": | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 243 module = module[:-3] # XXX What about leading pathname? | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 244 if registry is None: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 245 registry = {} | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 246 if isinstance(message, Warning): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 247 text = str(message) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 248 category = message.__class__ | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 249 else: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 250 text = message | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 251 message = category(message) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 252 key = (text, category, lineno) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 253 # Quick test for common case | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 254 if registry.get(key): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 255 return | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 256 # Search the filters | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 257 for item in filters: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 258 action, msg, cat, mod, ln = item | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 259 if ((msg is None or msg.match(text)) and | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 260 issubclass(category, cat) and | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 261 (mod is None or mod.match(module)) and | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 262 (ln == 0 or lineno == ln)): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 263 break | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 264 else: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 265 action = defaultaction | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 266 # Early exit actions | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 267 if action == "ignore": | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 268 registry[key] = 1 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 269 return | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 270 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 271 # Prime the linecache for formatting, in case the | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 272 # "file" is actually in a zipfile or something. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 273 linecache.getlines(filename, module_globals) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 274 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 275 if action == "error": | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 276 raise message | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 277 # Other actions | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 278 if action == "once": | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 279 registry[key] = 1 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 280 oncekey = (text, category) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 281 if onceregistry.get(oncekey): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 282 return | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 283 onceregistry[oncekey] = 1 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 284 elif action == "always": | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 285 pass | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 286 elif action == "module": | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 287 registry[key] = 1 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 288 altkey = (text, category, 0) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 289 if registry.get(altkey): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 290 return | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 291 registry[altkey] = 1 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 292 elif action == "default": | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 293 registry[key] = 1 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 294 else: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 295 # Unrecognized actions are errors | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 296 raise RuntimeError( | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 297 "Unrecognized action (%r) in warnings.filters:\n %s" % | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 298 (action, item)) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 299 # Print message and context | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 300 showwarning(message, category, filename, lineno) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 301 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 302 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 303 class WarningMessage(object): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 304 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 305 """Holds the result of a single showwarning() call.""" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 306 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 307 _WARNING_DETAILS = ("message", "category", "filename", "lineno", "file", | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 308 "line") | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 309 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 310 def __init__(self, message, category, filename, lineno, file=None, | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 311 line=None): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 312 local_values = locals() | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 313 for attr in self._WARNING_DETAILS: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 314 setattr(self, attr, local_values[attr]) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 315 self._category_name = category.__name__ if category else None | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 316 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 317 def __str__(self): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 318 return ("{message : %r, category : %r, filename : %r, lineno : %s, " | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 319 "line : %r}" % (self.message, self._category_name, | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 320 self.filename, self.lineno, self.line)) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 321 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 322 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 323 class catch_warnings(object): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 324 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 325 """A context manager that copies and restores the warnings filter upon | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 326 exiting the context. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 327 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 328 The 'record' argument specifies whether warnings should be captured by a | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 329 custom implementation of warnings.showwarning() and be appended to a list | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 330 returned by the context manager. Otherwise None is returned by the context | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 331 manager. The objects appended to the list are arguments whose attributes | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 332 mirror the arguments to showwarning(). | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 333 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 334 The 'module' argument is to specify an alternative module to the module | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 335 named 'warnings' and imported under that name. This argument is only useful | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 336 when testing the warnings module itself. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 337 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 338 """ | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 339 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 340 def __init__(self, record=False, module=None): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 341 """Specify whether to record warnings and if an alternative module | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 342 should be used other than sys.modules['warnings']. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 343 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 344 For compatibility with Python 3.0, please consider all arguments to be | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 345 keyword-only. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 346 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 347 """ | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 348 self._record = record | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 349 self._module = sys.modules['warnings'] if module is None else module | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 350 self._entered = False | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 351 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 352 def __repr__(self): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 353 args = [] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 354 if self._record: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 355 args.append("record=True") | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 356 if self._module is not sys.modules['warnings']: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 357 args.append("module=%r" % self._module) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 358 name = type(self).__name__ | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 359 return "%s(%s)" % (name, ", ".join(args)) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 360 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 361 def __enter__(self): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 362 if self._entered: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 363 raise RuntimeError("Cannot enter %r twice" % self) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 364 self._entered = True | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 365 self._filters = self._module.filters | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 366 self._module.filters = self._filters[:] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 367 self._showwarning = self._module.showwarning | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 368 if self._record: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 369 log = [] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 370 def showwarning(*args, **kwargs): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 371 log.append(WarningMessage(*args, **kwargs)) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 372 self._module.showwarning = showwarning | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 373 return log | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 374 else: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 375 return None | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 376 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 377 def __exit__(self, *exc_info): | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 378 if not self._entered: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 379 raise RuntimeError("Cannot exit %r without entering first" % self) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 380 self._module.filters = self._filters | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 381 self._module.showwarning = self._showwarning | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 382 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 383 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 384 # filters contains a sequence of filter 5-tuples | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 385 # The components of the 5-tuple are: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 386 # - an action: error, ignore, always, default, module, or once | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 387 # - a compiled regex that must match the warning message | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 388 # - a class representing the warning category | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 389 # - a compiled regex that must match the module that is being warned | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 390 # - a line number for the line being warning, or 0 to mean any line | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 391 # If either if the compiled regexs are None, match anything. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 392 _warnings_defaults = False | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 393 try: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 394 from _warnings import (filters, default_action, once_registry, | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 395 warn, warn_explicit) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 396 defaultaction = default_action | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 397 onceregistry = once_registry | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 398 _warnings_defaults = True | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 399 except ImportError: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 400 filters = [] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 401 defaultaction = "default" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 402 onceregistry = {} | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 403 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 404 | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 405 # Module initialization | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 406 _processoptions(sys.warnoptions) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 407 if not _warnings_defaults: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 408 silence = [ImportWarning, PendingDeprecationWarning] | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 409 # Don't silence DeprecationWarning if -3 or -Q was used. | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 410 if not sys.py3kwarning and not sys.flags.division_warning: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 411 silence.append(DeprecationWarning) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 412 for cls in silence: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 413 simplefilter("ignore", category=cls) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 414 bytes_warning = sys.flags.bytes_warning | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 415 if bytes_warning > 1: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 416 bytes_action = "error" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 417 elif bytes_warning: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 418 bytes_action = "default" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 419 else: | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 420 bytes_action = "ignore" | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 421 simplefilter(bytes_action, category=BytesWarning, append=1) | 
| 
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
 yating-l parents: diff
changeset | 422 del _warnings_defaults | 
