Mercurial > repos > yating-l > jbrowsearchivecreator
annotate test/lib/python2.7/warnings.py @ 3:7d1a9a91b989 draft
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
| author | yating-l |
|---|---|
| date | Thu, 18 May 2017 18:37:28 -0400 |
| parents | |
| children |
| rev | line source |
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3
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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changeset
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1 """Python part of the warnings subsystem.""" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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2 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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3 # Note: function level imports should *not* be used |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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4 # in this module as it may cause import lock deadlock. |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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5 # See bug 683658. |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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6 import linecache |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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7 import sys |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
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8 import types |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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9 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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changeset
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10 __all__ = ["warn", "warn_explicit", "showwarning", |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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changeset
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11 "formatwarning", "filterwarnings", "simplefilter", |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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changeset
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12 "resetwarnings", "catch_warnings"] |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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13 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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14 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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15 def warnpy3k(message, category=None, stacklevel=1): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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16 """Issue a deprecation warning for Python 3.x related changes. |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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17 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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18 Warnings are omitted unless Python is started with the -3 option. |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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19 """ |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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changeset
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20 if sys.py3kwarning: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
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21 if category is None: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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changeset
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22 category = DeprecationWarning |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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changeset
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23 warn(message, category, stacklevel+1) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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24 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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25 def _show_warning(message, category, filename, lineno, file=None, line=None): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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26 """Hook to write a warning to a file; replace if you like.""" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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27 if file is None: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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28 file = sys.stderr |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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changeset
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29 if file is None: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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30 # sys.stderr is None - warnings get lost |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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31 return |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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32 try: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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33 file.write(formatwarning(message, category, filename, lineno, line)) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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34 except (IOError, UnicodeError): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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35 pass # the file (probably stderr) is invalid - this warning gets lost. |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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36 # Keep a working version around in case the deprecation of the old API is |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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37 # triggered. |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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38 showwarning = _show_warning |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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39 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
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40 def formatwarning(message, category, filename, lineno, line=None): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
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41 """Function to format a warning the standard way.""" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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42 try: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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43 unicodetype = unicode |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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44 except NameError: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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45 unicodetype = () |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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46 try: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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47 message = str(message) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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48 except UnicodeEncodeError: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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49 pass |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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50 s = "%s: %s: %s\n" % (lineno, category.__name__, message) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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51 line = linecache.getline(filename, lineno) if line is None else line |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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52 if line: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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53 line = line.strip() |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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54 if isinstance(s, unicodetype) and isinstance(line, str): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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55 line = unicode(line, 'latin1') |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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56 s += " %s\n" % line |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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57 if isinstance(s, unicodetype) and isinstance(filename, str): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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58 enc = sys.getfilesystemencoding() |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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59 if enc: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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60 try: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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61 filename = unicode(filename, enc) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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62 except UnicodeDecodeError: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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63 pass |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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64 s = "%s:%s" % (filename, s) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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65 return s |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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66 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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67 def filterwarnings(action, message="", category=Warning, module="", lineno=0, |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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68 append=0): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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69 """Insert an entry into the list of warnings filters (at the front). |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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70 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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71 'action' -- one of "error", "ignore", "always", "default", "module", |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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72 or "once" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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73 'message' -- a regex that the warning message must match |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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74 'category' -- a class that the warning must be a subclass of |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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75 'module' -- a regex that the module name must match |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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76 'lineno' -- an integer line number, 0 matches all warnings |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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77 'append' -- if true, append to the list of filters |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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78 """ |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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79 import re |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
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80 assert action in ("error", "ignore", "always", "default", "module", |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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81 "once"), "invalid action: %r" % (action,) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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82 assert isinstance(message, basestring), "message must be a string" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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83 assert isinstance(category, (type, types.ClassType)), \ |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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84 "category must be a class" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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85 assert issubclass(category, Warning), "category must be a Warning subclass" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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86 assert isinstance(module, basestring), "module must be a string" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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87 assert isinstance(lineno, int) and lineno >= 0, \ |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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88 "lineno must be an int >= 0" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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89 item = (action, re.compile(message, re.I), category, |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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90 re.compile(module), lineno) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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91 if append: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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92 filters.append(item) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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93 else: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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94 filters.insert(0, item) |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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95 |
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7d1a9a91b989
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96 def simplefilter(action, category=Warning, lineno=0, append=0): |
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97 """Insert a simple entry into the list of warnings filters (at the front). |
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7d1a9a91b989
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98 |
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99 A simple filter matches all modules and messages. |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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100 'action' -- one of "error", "ignore", "always", "default", "module", |
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7d1a9a91b989
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101 or "once" |
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102 'category' -- a class that the warning must be a subclass of |
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103 'lineno' -- an integer line number, 0 matches all warnings |
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7d1a9a91b989
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104 'append' -- if true, append to the list of filters |
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105 """ |
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106 assert action in ("error", "ignore", "always", "default", "module", |
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107 "once"), "invalid action: %r" % (action,) |
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108 assert isinstance(lineno, int) and lineno >= 0, \ |
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109 "lineno must be an int >= 0" |
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110 item = (action, None, category, None, lineno) |
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7d1a9a91b989
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111 if append: |
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112 filters.append(item) |
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113 else: |
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114 filters.insert(0, item) |
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115 |
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116 def resetwarnings(): |
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117 """Clear the list of warning filters, so that no filters are active.""" |
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7d1a9a91b989
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118 filters[:] = [] |
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119 |
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120 class _OptionError(Exception): |
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121 """Exception used by option processing helpers.""" |
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122 pass |
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123 |
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124 # Helper to process -W options passed via sys.warnoptions |
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125 def _processoptions(args): |
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126 for arg in args: |
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127 try: |
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128 _setoption(arg) |
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129 except _OptionError, msg: |
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130 print >>sys.stderr, "Invalid -W option ignored:", msg |
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131 |
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132 # Helper for _processoptions() |
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133 def _setoption(arg): |
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134 import re |
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135 parts = arg.split(':') |
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136 if len(parts) > 5: |
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137 raise _OptionError("too many fields (max 5): %r" % (arg,)) |
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138 while len(parts) < 5: |
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139 parts.append('') |
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140 action, message, category, module, lineno = [s.strip() |
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141 for s in parts] |
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142 action = _getaction(action) |
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143 message = re.escape(message) |
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144 category = _getcategory(category) |
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145 module = re.escape(module) |
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146 if module: |
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147 module = module + '$' |
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148 if lineno: |
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149 try: |
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150 lineno = int(lineno) |
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151 if lineno < 0: |
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152 raise ValueError |
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153 except (ValueError, OverflowError): |
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154 raise _OptionError("invalid lineno %r" % (lineno,)) |
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155 else: |
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156 lineno = 0 |
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157 filterwarnings(action, message, category, module, lineno) |
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158 |
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159 # Helper for _setoption() |
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160 def _getaction(action): |
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161 if not action: |
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162 return "default" |
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163 if action == "all": return "always" # Alias |
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164 for a in ('default', 'always', 'ignore', 'module', 'once', 'error'): |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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165 if a.startswith(action): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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166 return a |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
167 raise _OptionError("invalid action: %r" % (action,)) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
|
168 |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
169 # Helper for _setoption() |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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170 def _getcategory(category): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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171 import re |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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172 if not category: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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173 return Warning |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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174 if re.match("^[a-zA-Z0-9_]+$", category): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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175 try: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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176 cat = eval(category) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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177 except NameError: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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178 raise _OptionError("unknown warning category: %r" % (category,)) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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179 else: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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180 i = category.rfind(".") |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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181 module = category[:i] |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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182 klass = category[i+1:] |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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183 try: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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184 m = __import__(module, None, None, [klass]) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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185 except ImportError: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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186 raise _OptionError("invalid module name: %r" % (module,)) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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187 try: |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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188 cat = getattr(m, klass) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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189 except AttributeError: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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190 raise _OptionError("unknown warning category: %r" % (category,)) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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191 if not issubclass(cat, Warning): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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192 raise _OptionError("invalid warning category: %r" % (category,)) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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193 return cat |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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194 |
|
7d1a9a91b989
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195 |
|
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196 # Code typically replaced by _warnings |
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7d1a9a91b989
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197 def warn(message, category=None, stacklevel=1): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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198 """Issue a warning, or maybe ignore it or raise an exception.""" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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199 # Check if message is already a Warning object |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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200 if isinstance(message, Warning): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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201 category = message.__class__ |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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202 # Check category argument |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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203 if category is None: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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204 category = UserWarning |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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205 assert issubclass(category, Warning) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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206 # Get context information |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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207 try: |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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208 caller = sys._getframe(stacklevel) |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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209 except ValueError: |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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210 globals = sys.__dict__ |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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211 lineno = 1 |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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212 else: |
|
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213 globals = caller.f_globals |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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214 lineno = caller.f_lineno |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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215 if '__name__' in globals: |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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216 module = globals['__name__'] |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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217 else: |
|
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218 module = "<string>" |
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219 filename = globals.get('__file__') |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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220 if filename: |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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221 fnl = filename.lower() |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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222 if fnl.endswith((".pyc", ".pyo")): |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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223 filename = filename[:-1] |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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224 else: |
|
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225 if module == "__main__": |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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226 try: |
|
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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227 filename = sys.argv[0] |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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228 except AttributeError: |
|
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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229 # embedded interpreters don't have sys.argv, see bug #839151 |
|
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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230 filename = '__main__' |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
231 if not filename: |
|
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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232 filename = module |
|
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233 registry = globals.setdefault("__warningregistry__", {}) |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
234 warn_explicit(message, category, filename, lineno, module, registry, |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
235 globals) |
|
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
236 |
|
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237 def warn_explicit(message, category, filename, lineno, |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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|
238 module=None, registry=None, module_globals=None): |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
239 lineno = int(lineno) |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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changeset
|
240 if module is None: |
|
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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|
241 module = filename or "<unknown>" |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
242 if module[-3:].lower() == ".py": |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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|
243 module = module[:-3] # XXX What about leading pathname? |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
|
244 if registry is None: |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
|
245 registry = {} |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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|
246 if isinstance(message, Warning): |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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|
247 text = str(message) |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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248 category = message.__class__ |
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249 else: |
|
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250 text = message |
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251 message = category(message) |
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252 key = (text, category, lineno) |
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253 # Quick test for common case |
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254 if registry.get(key): |
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255 return |
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256 # Search the filters |
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257 for item in filters: |
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258 action, msg, cat, mod, ln = item |
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259 if ((msg is None or msg.match(text)) and |
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260 issubclass(category, cat) and |
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261 (mod is None or mod.match(module)) and |
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262 (ln == 0 or lineno == ln)): |
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263 break |
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264 else: |
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265 action = defaultaction |
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266 # Early exit actions |
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267 if action == "ignore": |
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268 registry[key] = 1 |
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269 return |
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270 |
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271 # Prime the linecache for formatting, in case the |
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272 # "file" is actually in a zipfile or something. |
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273 linecache.getlines(filename, module_globals) |
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274 |
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275 if action == "error": |
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276 raise message |
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277 # Other actions |
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278 if action == "once": |
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279 registry[key] = 1 |
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280 oncekey = (text, category) |
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281 if onceregistry.get(oncekey): |
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282 return |
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283 onceregistry[oncekey] = 1 |
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284 elif action == "always": |
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285 pass |
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286 elif action == "module": |
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287 registry[key] = 1 |
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288 altkey = (text, category, 0) |
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289 if registry.get(altkey): |
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290 return |
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291 registry[altkey] = 1 |
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292 elif action == "default": |
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293 registry[key] = 1 |
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294 else: |
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295 # Unrecognized actions are errors |
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296 raise RuntimeError( |
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297 "Unrecognized action (%r) in warnings.filters:\n %s" % |
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298 (action, item)) |
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299 # Print message and context |
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300 showwarning(message, category, filename, lineno) |
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301 |
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302 |
|
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303 class WarningMessage(object): |
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304 |
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305 """Holds the result of a single showwarning() call.""" |
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306 |
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307 _WARNING_DETAILS = ("message", "category", "filename", "lineno", "file", |
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308 "line") |
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309 |
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310 def __init__(self, message, category, filename, lineno, file=None, |
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311 line=None): |
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312 local_values = locals() |
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313 for attr in self._WARNING_DETAILS: |
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314 setattr(self, attr, local_values[attr]) |
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315 self._category_name = category.__name__ if category else None |
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316 |
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317 def __str__(self): |
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318 return ("{message : %r, category : %r, filename : %r, lineno : %s, " |
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319 "line : %r}" % (self.message, self._category_name, |
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320 self.filename, self.lineno, self.line)) |
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321 |
|
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322 |
|
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323 class catch_warnings(object): |
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324 |
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325 """A context manager that copies and restores the warnings filter upon |
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326 exiting the context. |
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327 |
|
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328 The 'record' argument specifies whether warnings should be captured by a |
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329 custom implementation of warnings.showwarning() and be appended to a list |
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330 returned by the context manager. Otherwise None is returned by the context |
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331 manager. The objects appended to the list are arguments whose attributes |
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332 mirror the arguments to showwarning(). |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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changeset
|
333 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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334 The 'module' argument is to specify an alternative module to the module |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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335 named 'warnings' and imported under that name. This argument is only useful |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
336 when testing the warnings module itself. |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
337 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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338 """ |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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339 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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340 def __init__(self, record=False, module=None): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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341 """Specify whether to record warnings and if an alternative module |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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342 should be used other than sys.modules['warnings']. |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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343 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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344 For compatibility with Python 3.0, please consider all arguments to be |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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345 keyword-only. |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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346 |
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7d1a9a91b989
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347 """ |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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348 self._record = record |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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349 self._module = sys.modules['warnings'] if module is None else module |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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350 self._entered = False |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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351 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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352 def __repr__(self): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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353 args = [] |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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354 if self._record: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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355 args.append("record=True") |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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356 if self._module is not sys.modules['warnings']: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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357 args.append("module=%r" % self._module) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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358 name = type(self).__name__ |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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359 return "%s(%s)" % (name, ", ".join(args)) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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360 |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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361 def __enter__(self): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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362 if self._entered: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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363 raise RuntimeError("Cannot enter %r twice" % self) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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364 self._entered = True |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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365 self._filters = self._module.filters |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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366 self._module.filters = self._filters[:] |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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367 self._showwarning = self._module.showwarning |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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changeset
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368 if self._record: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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369 log = [] |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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370 def showwarning(*args, **kwargs): |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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371 log.append(WarningMessage(*args, **kwargs)) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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372 self._module.showwarning = showwarning |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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373 return log |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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374 else: |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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375 return None |
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7d1a9a91b989
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376 |
|
7d1a9a91b989
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377 def __exit__(self, *exc_info): |
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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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378 if not self._entered: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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379 raise RuntimeError("Cannot exit %r without entering first" % self) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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380 self._module.filters = self._filters |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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381 self._module.showwarning = self._showwarning |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
382 |
|
7d1a9a91b989
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383 |
|
7d1a9a91b989
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384 # filters contains a sequence of filter 5-tuples |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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385 # The components of the 5-tuple are: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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386 # - an action: error, ignore, always, default, module, or once |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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387 # - a compiled regex that must match the warning message |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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388 # - a class representing the warning category |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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389 # - a compiled regex that must match the module that is being warned |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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390 # - a line number for the line being warning, or 0 to mean any line |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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391 # If either if the compiled regexs are None, match anything. |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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392 _warnings_defaults = False |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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393 try: |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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394 from _warnings import (filters, default_action, once_registry, |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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395 warn, warn_explicit) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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396 defaultaction = default_action |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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397 onceregistry = once_registry |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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398 _warnings_defaults = True |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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399 except ImportError: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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400 filters = [] |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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401 defaultaction = "default" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
402 onceregistry = {} |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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changeset
|
403 |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
|
404 |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
405 # Module initialization |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
406 _processoptions(sys.warnoptions) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
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|
407 if not _warnings_defaults: |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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|
408 silence = [ImportWarning, PendingDeprecationWarning] |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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|
409 # Don't silence DeprecationWarning if -3 or -Q was used. |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
|
410 if not sys.py3kwarning and not sys.flags.division_warning: |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
|
411 silence.append(DeprecationWarning) |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
|
412 for cls in silence: |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
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|
413 simplefilter("ignore", category=cls) |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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|
414 bytes_warning = sys.flags.bytes_warning |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
|
415 if bytes_warning > 1: |
|
7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
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416 bytes_action = "error" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
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417 elif bytes_warning: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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changeset
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418 bytes_action = "default" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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diff
changeset
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419 else: |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
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420 bytes_action = "ignore" |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
parents:
diff
changeset
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421 simplefilter(bytes_action, category=BytesWarning, append=1) |
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7d1a9a91b989
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
yating-l
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diff
changeset
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422 del _warnings_defaults |
