Mercurial > repos > yating-l > jbrowse_hub

changeset 10:e76638b1532c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit f18ea51d27ec7addfa6413716391cfefebc8acbc-dirty
author yating-l
date Tue, 14 Mar 2017 13:11:22 -0400
parents 83202aa58873
children 22efe9f6e8a8
files tool_dependencies.xml
diffstat 1 files changed, 5 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Mar 14 12:57:23 2017 -0400
+++ b/tool_dependencies.xml	Tue Mar 14 13:11:22 2017 -0400
@@ -61,13 +61,15 @@
             <actions_group>
                 <actions architecture="x86_64" os="linux">
                     <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/jbrowse_tools.tar.gz</action>
+                    <action type="make_directory">$INSTALL_DIR/jbrowse</action>
                     <action type="move_directory_files">
-                        <source_directory>bin</source_directory>                       
-                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                        <source_directory>.</source_directory>                       
+                        <destination_directory>$INSTALL_DIR/jbrowse</destination_directory>
                     </action>    
                 </actions>
                 <action type="set_environment">
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/bin</environment_variable>
                 </action>
             </actions_group>
          </install>