Mercurial > repos > yating-l > jbrowse_hub
changeset 54:9c45b81bc4e6 draft
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit a505d6c97db9d044761b5ce92be4a39cb84eda29-dirty
| author | yating-l |
|---|---|
| date | Fri, 31 Mar 2017 12:04:59 -0400 |
| parents | 1e4806330e51 |
| children | 972b83917c18 |
| files | TrackHub.py |
| diffstat | 1 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/TrackHub.py Fri Mar 31 11:54:09 2017 -0400 +++ b/TrackHub.py Fri Mar 31 12:04:59 2017 -0400 @@ -103,7 +103,7 @@ with open(self.outfile, 'w') as htmlfile: htmlstr = 'The JBrowse Hub is created: <br>' zipfiles = '<li><a href = "%s">Download</a></li>' - jbrowse_hub = '<li><a href = "/gonramp/static/JBrowse-1.12.1/index.html?data="%s" target="_blank">View JBrowse Hub</a></li>' + jbrowse_hub = '<li><a href = "/gonramp/static/JBrowse-1.12.1/index.html?data=%s" target="_blank">View JBrowse Hub</a></li>' filedir_abs = os.path.abspath(self.outfile) filedir = os.path.dirname(filedir_abs) filedir = os.path.join(filedir, self.outfolder) @@ -113,7 +113,9 @@ relative_directory = os.path.relpath(root, filedir) relative_file_path = os.path.join(relative_directory, file) htmlstr += zipfiles % relative_file_path - htmlstr += jbrowse_hub % slink + link_name = os.path.basename(slink) + relative_path = os.path.join('data', link_name + '/json') + htmlstr += jbrowse_hub % relative_path htmlfile.write(htmlstr) def createTrackList(self):