# HG changeset patch
# User yating-l
# Date 1490976299 14400
# Node ID 9c45b81bc4e6bf9fc3f73cc9a99b2abe695aad3c
# Parent  1e4806330e51798fbf4b0418ef15a46d632c812d
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit a505d6c97db9d044761b5ce92be4a39cb84eda29-dirty

diff -r 1e4806330e51 -r 9c45b81bc4e6 TrackHub.py
--- a/TrackHub.py	Fri Mar 31 11:54:09 2017 -0400
+++ b/TrackHub.py	Fri Mar 31 12:04:59 2017 -0400
@@ -103,7 +103,7 @@
         with open(self.outfile, 'w') as htmlfile:
             htmlstr = 'The JBrowse Hub is created: <br>'
             zipfiles = '<li><a href = "%s">Download</a></li>'
-            jbrowse_hub = '<li><a href = "/gonramp/static/JBrowse-1.12.1/index.html?data="%s" target="_blank">View JBrowse Hub</a></li>'
+            jbrowse_hub = '<li><a href = "/gonramp/static/JBrowse-1.12.1/index.html?data=%s" target="_blank">View JBrowse Hub</a></li>'
             filedir_abs = os.path.abspath(self.outfile)
             filedir = os.path.dirname(filedir_abs)
             filedir = os.path.join(filedir, self.outfolder)
@@ -113,7 +113,9 @@
                         relative_directory = os.path.relpath(root, filedir)
                         relative_file_path = os.path.join(relative_directory, file)
                         htmlstr += zipfiles % relative_file_path
-            htmlstr += jbrowse_hub % slink
+            link_name = os.path.basename(slink)
+            relative_path = os.path.join('data', link_name + '/json')
+            htmlstr += jbrowse_hub % relative_path
             htmlfile.write(htmlstr)
 
     def createTrackList(self):