Mercurial > repos > yating-l > jbrowse_hub
changeset 46:66db979c21f0 draft
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit 73ede51a133dc8914812195a1b4cd512bfb8f23d-dirty
| author | yating-l |
|---|---|
| date | Wed, 22 Mar 2017 15:17:19 -0400 |
| parents | 15b4a74722d1 |
| children | b7bf45272ab7 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 11 insertions(+), 8 deletions(-) [+] |
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--- a/tool_dependencies.xml Wed Mar 22 12:07:32 2017 -0400 +++ b/tool_dependencies.xml Wed Mar 22 15:17:19 2017 -0400 @@ -63,22 +63,25 @@ <readme>The well known UCSC tools from Jim Kent.</readme> </package> <package name="jbrowse_tools" version="1.12.1"> - <install version="1.0"> + <install version="1.1"> <actions_group> <actions architecture="x86_64" os="linux"> - <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/jbrowse_tools.tar.gz</action> + <action type="download_by_url">http://jbrowse.org/wordpress/wp-content/plugins/download-monitor/download.php?id=105</action> <action type="make_directory">$INSTALL_DIR/jbrowse</action> + <action type="shell_command"> + ./setup.sh + </action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR/jbrowse</destination_directory> </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/bin</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/src</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/extlib</environment_variable> + </action> </actions> - <action type="set_environment"> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/bin</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/src</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/extlib</environment_variable> - </action> </actions_group> </install> <readme>The perl scripts for converting flat files to json.</readme>