Mercurial > repos > yating-l > jbrowse_hub

changeset 38:3a3591cf27f9 draft

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planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit faeedda55e23f1197bc454d3db2d52af29d786e8-dirty
author yating-l
date Fri, 17 Mar 2017 16:28:21 -0400
parents 046c5bfc0413
children 75edbc203532
files jbrowse_hub.xml
diffstat 1 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/jbrowse_hub.xml	Fri Mar 17 16:21:25 2017 -0400
+++ b/jbrowse_hub.xml	Fri Mar 17 16:28:21 2017 -0400
@@ -39,7 +39,6 @@
         #for $f in $format
             #set track_label =  str($f.formatChoice.label)
             #set track_color = str($f.formatChoice.track_color)
-            #set track_type = str($f.formatChoice.track_type)
             #set extra_data_dict = {"label" : $track_label, 
                                     "track_color" : $track_color} 
             #if $f.formatChoice.format_select == 'bed'
@@ -56,6 +55,8 @@
                 #silent $prepare_json($f.formatChoice.BAM, extra_data_dict)
             #end if
             #if $f.formatChoice.format_select == 'gff3'
+                #set track_type = $f.formatChoice.track_type
+                #silent extra_data_dict.update({"track_type" : $track_type})
                 #if $f.formatChoice.gff3Choice.gff3_select == 'gff3_transcript'
                     --gff3_transcript $f.formatChoice.gff3Choice.GFF3_transcript
                     #silent $prepare_json($f.formatChoice.gff3Choice.GFF3_transcript, extra_data_dict)
@@ -65,6 +66,8 @@
                 #end if
             #end if
             #if $f.formatChoice.format_select == 'blastxml'
+                #set track_type = $f.formatChoice.track_type
+                #silent extra_data_dict.update({"track_type" : $track_type})
                 --blastxml $f.formatChoice.BlastXML
                 #silent $prepare_json($f.formatChoice.BlastXML, extra_data_dict)
             #end if