# HG changeset patch # User yating-l # Date 1489782501 14400 # Node ID 3a3591cf27f972a153b48ebeba5138e1d99537e6 # Parent 046c5bfc0413173166bc760dc40eb13c264e18b3 planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit faeedda55e23f1197bc454d3db2d52af29d786e8-dirty diff -r 046c5bfc0413 -r 3a3591cf27f9 jbrowse_hub.xml --- a/jbrowse_hub.xml Fri Mar 17 16:21:25 2017 -0400 +++ b/jbrowse_hub.xml Fri Mar 17 16:28:21 2017 -0400 @@ -39,7 +39,6 @@ #for $f in $format #set track_label = str($f.formatChoice.label) #set track_color = str($f.formatChoice.track_color) - #set track_type = str($f.formatChoice.track_type) #set extra_data_dict = {"label" : $track_label, "track_color" : $track_color} #if $f.formatChoice.format_select == 'bed' @@ -56,6 +55,8 @@ #silent $prepare_json($f.formatChoice.BAM, extra_data_dict) #end if #if $f.formatChoice.format_select == 'gff3' + #set track_type = $f.formatChoice.track_type + #silent extra_data_dict.update({"track_type" : $track_type}) #if $f.formatChoice.gff3Choice.gff3_select == 'gff3_transcript' --gff3_transcript $f.formatChoice.gff3Choice.GFF3_transcript #silent $prepare_json($f.formatChoice.gff3Choice.GFF3_transcript, extra_data_dict) @@ -65,6 +66,8 @@ #end if #end if #if $f.formatChoice.format_select == 'blastxml' + #set track_type = $f.formatChoice.track_type + #silent extra_data_dict.update({"track_type" : $track_type}) --blastxml $f.formatChoice.BlastXML #silent $prepare_json($f.formatChoice.BlastXML, extra_data_dict) #end if