Mercurial > repos > yating-l > jbrowse_hub
changeset 44:37422f705e9b draft
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit 149c5cbda82f49f260767b5710f0c2160eebc881-dirty
| author | yating-l |
|---|---|
| date | Mon, 20 Mar 2017 13:15:34 -0400 |
| parents | b32f9f4793f8 |
| children | 15b4a74722d1 |
| files | TrackHub.py |
| diffstat | 1 files changed, 5 insertions(+), 2 deletions(-) [+] |
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--- a/TrackHub.py Mon Mar 20 12:46:12 2017 -0400 +++ b/TrackHub.py Mon Mar 20 13:15:34 2017 -0400 @@ -107,7 +107,8 @@ bam_track['storeClass'] = 'JBrowse/Store/SeqFeature/BAM' bam_track['urlTemplate'] = os.path.join('../raw', track['fileName']) bam_track['baiUrlTemplate'] = os.path.join('../raw', track['index']) - bam_track.update(metadata) + bam_track['label'] = metadata['label'] + bam_track['category'] = metadata['category'] utils.add_tracks_to_json(json_file, bam_track, 'add_tracks') def BigWig(self, track, metadata): @@ -120,7 +121,9 @@ bigwig_track['urlTemplate'] = os.path.join('../raw', track['fileName']) bigwig_track['type'] = 'JBrowse/View/Track/Wiggle/XYPlot' bigwig_track['storeClass'] = 'JBrowse/Store/SeqFeature/BigWig' - bigwig_track.update(metadata) + bigwig_track['label'] = metadata['label'] + bigwig_track['style'] = metadata['style'] + bigwig_track['category'] = metadata['category'] utils.add_tracks_to_json(json_file, bigwig_track, 'add_tracks') #If the metadata is not set, use the default value