Mercurial > repos > yating-l > jbrowse_hub
changeset 7:3511d4f604a7 draft
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit f18ea51d27ec7addfa6413716391cfefebc8acbc-dirty
| author | yating-l |
|---|---|
| date | Tue, 14 Mar 2017 12:46:35 -0400 |
| parents | 570605affa94 |
| children | 49ae780956f0 |
| files | jbrowse_hub.xml tool_dependencies.xml |
| diffstat | 2 files changed, 19 insertions(+), 0 deletions(-) [+] |
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--- a/jbrowse_hub.xml Tue Mar 14 12:33:53 2017 -0400 +++ b/jbrowse_hub.xml Tue Mar 14 12:46:35 2017 -0400 @@ -7,6 +7,7 @@ <requirement type="package" version="1.9">numpy</requirement> <requirement type="package" version="1.68">biopython</requirement> <requirement type="package" version="1.0">ucsc_tools_340</requirement> + <requirement type="package" version="1.12.1">jbrowse_tools</requirement> </requirements> <stdio>
--- a/tool_dependencies.xml Tue Mar 14 12:33:53 2017 -0400 +++ b/tool_dependencies.xml Tue Mar 14 12:46:35 2017 -0400 @@ -56,5 +56,23 @@ </install> <readme>The well known UCSC tools from Jim Kent.</readme> </package> + <package name="jbrowse_tools" version="1.12.1"> + <install version="1.0"> + <actions_group> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/jbrowse_tools.tar.gz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + </actions> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions_group> + </install> + <readme>The perl scripts for converting flat files to json.</readme> + </package> + </tool_dependency>