# HG changeset patch
# User yating-l
# Date 1489509995 14400
# Node ID 3511d4f604a7a7f6903c43c28865ce8e9d1161b5
# Parent  570605affa9430007a3dfbdadea88e9c43013b5e
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit f18ea51d27ec7addfa6413716391cfefebc8acbc-dirty

diff -r 570605affa94 -r 3511d4f604a7 jbrowse_hub.xml
--- a/jbrowse_hub.xml	Tue Mar 14 12:33:53 2017 -0400
+++ b/jbrowse_hub.xml	Tue Mar 14 12:46:35 2017 -0400
@@ -7,6 +7,7 @@
         <requirement type="package" version="1.9">numpy</requirement>
         <requirement type="package" version="1.68">biopython</requirement>
         <requirement type="package" version="1.0">ucsc_tools_340</requirement>
+        <requirement type="package" version="1.12.1">jbrowse_tools</requirement>
     </requirements>
 
     <stdio>
diff -r 570605affa94 -r 3511d4f604a7 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Mar 14 12:33:53 2017 -0400
+++ b/tool_dependencies.xml	Tue Mar 14 12:46:35 2017 -0400
@@ -56,5 +56,23 @@
          </install>
          <readme>The well known UCSC tools from Jim Kent.</readme>
     </package>
+    <package name="jbrowse_tools" version="1.12.1">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/jbrowse_tools.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>                       
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>    
+                </actions>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+         </install>
+         <readme>The perl scripts for converting flat files to json.</readme>
+    </package>
+
     
 </tool_dependency>