Mercurial > repos > yating-l > jbrowse_hub

diff jbrowse_hub.py @ 42:a5108e5010b4 draft

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planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit 149c5cbda82f49f260767b5710f0c2160eebc881-dirty
author yating-l
date Mon, 20 Mar 2017 12:35:33 -0400
parents 75edbc203532
children 3e5b6f6a9abe
line wrap: on
line diff
--- a/jbrowse_hub.py	Fri Mar 17 19:06:49 2017 -0400
+++ b/jbrowse_hub.py	Mon Mar 20 12:35:33 2017 -0400
@@ -128,15 +128,15 @@
             print 'Cannot open', datatype
         else:
             for f in inputfiles:
-                metadata = {}
+                #metadata = {}
                 #print f
-                if f in inputs_data.keys():
-                    metadata = inputs_data[f]
-                    print metadata
+                #if f in inputs_data.keys():
+                   # metadata = inputs_data[f]
+                    #print metadata
                 #Convert tracks into gff3 format
-                all_tracks.addToRaw(f, datatype, metadata)
+                all_tracks.addToRaw(f, datatype)
 
-    jbrowseHub = TrackHub.TrackHub(all_tracks, reference, out_path, tool_directory, genome, extra_files_path)
+    jbrowseHub = TrackHub.TrackHub(all_tracks, reference, out_path, tool_directory, genome, extra_files_path, inputs_data)
     jbrowseHub.createHub()
 
 """