comparison jbrowse_hub.py @ 42:a5108e5010b4 draft

planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit 149c5cbda82f49f260767b5710f0c2160eebc881-dirty

41:6a5f78bc0bed

                raise ValueError('empty input, must provide track files!\n')
        except IOError:
            print 'Cannot open', datatype
        else:
            for f in inputfiles:
                metadata = {}
                #print f
                if f in inputs_data.keys():
                    metadata = inputs_data[f]
                    print metadata
                #Convert tracks into gff3 format
                all_tracks.addToRaw(f, datatype, metadata)

    jbrowseHub = TrackHub.TrackHub(all_tracks, reference, out_path, tool_directory, genome, extra_files_path)
    jbrowseHub.createHub()

"""        
def extractMetadata(array_inputs, inputs_data):
    metadata_dict = {}

42:a5108e5010b4

                raise ValueError('empty input, must provide track files!\n')
        except IOError:
            print 'Cannot open', datatype
        else:
            for f in inputfiles:
                #metadata = {}
                #print f
                #if f in inputs_data.keys():
                   # metadata = inputs_data[f]
                    #print metadata
                #Convert tracks into gff3 format
                all_tracks.addToRaw(f, datatype)

    jbrowseHub = TrackHub.TrackHub(all_tracks, reference, out_path, tool_directory, genome, extra_files_path, inputs_data)
    jbrowseHub.createHub()

"""        
def extractMetadata(array_inputs, inputs_data):
    metadata_dict = {}