Mercurial > repos > yating-l > jbrowse_hub
comparison tool_dependencies.xml @ 46:66db979c21f0 draft
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit 73ede51a133dc8914812195a1b4cd512bfb8f23d-dirty
| author | yating-l |
|---|---|
| date | Wed, 22 Mar 2017 15:17:19 -0400 |
| parents | d8049deb0c97 |
| children | b7bf45272ab7 |
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| 45:15b4a74722d1 | 46:66db979c21f0 |
|---|---|
| 61 </actions_group> | 61 </actions_group> |
| 62 </install> | 62 </install> |
| 63 <readme>The well known UCSC tools from Jim Kent.</readme> | 63 <readme>The well known UCSC tools from Jim Kent.</readme> |
| 64 </package> | 64 </package> |
| 65 <package name="jbrowse_tools" version="1.12.1"> | 65 <package name="jbrowse_tools" version="1.12.1"> |
| 66 <install version="1.0"> | 66 <install version="1.1"> |
| 67 <actions_group> | 67 <actions_group> |
| 68 <actions architecture="x86_64" os="linux"> | 68 <actions architecture="x86_64" os="linux"> |
| 69 <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/jbrowse_tools.tar.gz</action> | 69 <action type="download_by_url">http://jbrowse.org/wordpress/wp-content/plugins/download-monitor/download.php?id=105</action> |
| 70 <action type="make_directory">$INSTALL_DIR/jbrowse</action> | 70 <action type="make_directory">$INSTALL_DIR/jbrowse</action> |
| 71 <action type="shell_command"> | |
| 72 ./setup.sh | |
| 73 </action> | |
| 71 <action type="move_directory_files"> | 74 <action type="move_directory_files"> |
| 72 <source_directory>.</source_directory> | 75 <source_directory>.</source_directory> |
| 73 <destination_directory>$INSTALL_DIR/jbrowse</destination_directory> | 76 <destination_directory>$INSTALL_DIR/jbrowse</destination_directory> |
| 74 </action> | 77 </action> |
| 78 <action type="set_environment"> | |
| 79 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse</environment_variable> | |
| 80 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/bin</environment_variable> | |
| 81 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/src</environment_variable> | |
| 82 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/extlib</environment_variable> | |
| 83 </action> | |
| 75 </actions> | 84 </actions> |
| 76 <action type="set_environment"> | |
| 77 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse</environment_variable> | |
| 78 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/bin</environment_variable> | |
| 79 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/src</environment_variable> | |
| 80 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/extlib</environment_variable> | |
| 81 </action> | |
| 82 </actions_group> | 85 </actions_group> |
| 83 </install> | 86 </install> |
| 84 <readme>The perl scripts for converting flat files to json.</readme> | 87 <readme>The perl scripts for converting flat files to json.</readme> |
| 85 </package> | 88 </package> |
| 86 | 89 |