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1 table bigGenePred
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2 "bigGenePred gene models"
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3 (
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4 string chrom; "Reference sequence chromosome or scaffold"
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5 uint chromStart; "Start position in chromosome"
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6 uint chromEnd; "End position in chromosome"
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7 string name; "Name or ID of item, ideally both human readable and unique"
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8 uint score; "Score (0-1000)"
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9 char[1] strand; "+ or - for strand"
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10 uint thickStart; "Start of where display should be thick (start codon)"
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11 uint thickEnd; "End of where display should be thick (stop codon)"
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12 uint reserved; "RGB value (use R,G,B string in input file)"
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13 int blockCount; "Number of blocks"
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14 int[blockCount] blockSizes; "Comma separated list of block sizes"
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15 int[blockCount] chromStarts; "Start positions relative to chromStart"
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16 string name2; "Alternative/human readable name"
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17 string cdsStartStat; "Status of CDS start annotation (none, unknown, incomplete, or complete)"
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18 string cdsEndStat; "Status of CDS end annotation (none, unknown, incomplete, or complete)"
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19 int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon"
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20 string type; "Transcript type"
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21 string geneName; "Primary identifier for gene"
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22 string geneName2; "Alternative/human readable gene name"
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23 string geneType; "Gene type"
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24 )
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25
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