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annotate tool_dependencies.xml @ 51:364b8db8de17 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 6ac76e7da539ca1773fb809054679f0bf8a06972-dirty
author yating-l
date Wed, 12 Apr 2017 16:51:03 -0400
parents 3e0c61b52a06
children c66803bff0cc
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3e0c61b52a06 planemo upload for repository https://github.com/Yating-L/hub-archive-creator commit a77635b40ebd29baafb3bea57f8cbfb3f252e3b0-dirty
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <!-- UCSC Tools in -->
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4 <!-- Useful for HAC are:
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5 - twoBitInfo
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6 - sort
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7 - bedToBigBed
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8 - gff3ToGenePred
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9 - gtfToGenePred
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10 - genePredToBed
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11 - genePredToBigGenePred
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12 - faToTwoBit
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13 - samtools
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14 - pslToBigPsl
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15 -->
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16 <package name="samtools" version="1.2">
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17 <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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18 </package>
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20 <package name="ucsc_tools_340" version="1.0">
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21 <install version="1.0">
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22 <actions_group>
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23 <actions architecture="x86_64" os="linux">
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24 <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/ucsc_tools_340.tar.gz</action>
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25 <action type="move_directory_files">
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26 <source_directory>.</source_directory>
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27 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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28 </action>
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29 </actions>
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30 <action type="set_environment">
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31 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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32 </action>
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33 </actions_group>
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34 </install>
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35 <readme>The well known UCSC tools from Jim Kent.</readme>
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36 </package>
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37
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38 </tool_dependency>