Mercurial > repos > yating-l > gbtofasta

changeset 6:97499dcb77fa draft

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planemo upload commit d860eb554edd28f07d8586e7fb2599514937873a
author yating-l
date Mon, 06 Nov 2017 15:28:55 -0500
parents e195691d3e71
children 57e30c6c0aa4
files gbToFasta.xml test-data/Gallus_gallus_RefSeq.ixx
diffstat 2 files changed, 9 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/gbToFasta.xml	Thu Sep 28 16:25:57 2017 -0400
+++ b/gbToFasta.xml	Mon Nov 06 15:28:55 2017 -0500
@@ -48,7 +48,7 @@
             <data format="tabular" name="outputcds" label="${tool.name} on ${on_string}:cds">
                   <filter>cds == "yes"</filter>
             </data>
-            <collection name="trix_index" type="list" label="Trix index">
+            <collection name="trix_index" type="list" label="${tool.name} on ${on_string}:Trix index">
                   <filter>trix == "yes"</filter>
                   <data name="index_ix" format="txt" from_work_dir="output.ix"/>
                   <data name="index_ixx" format="txt" from_work_dir="output.ixx" />
@@ -58,15 +58,20 @@
       <test>
             <param name="gbfile" value="Gallus_gallus_RefSeq.gb" />
             <param name="cds" value="yes" />
+            <param name="trix" value="yes" />
             <output name="outputfa" value="Gallus_gallus_RefSeq.fa" />
             <output name="outputcds" value="Gallus_gallus_RefSeq.cds" />
-            <output name="index_ix" value="Gallus_gallus_RefSeq.ix" />
+            <output_collection name="trix_index" type="list"> 
+                  <element name="index_ix" value="Gallus_gallus_RefSeq.ix" />
+                  <element name="index_ixx" value="Gallus_gallus_RefSeq.ixx" />
+            </output_collection>
       </test>
+
       <test>
             <param name="gbfile" value="Gallus_gallus_RefSeq.gb" />
             <param name="cds" value="no" />
+            <param name="trix" value="no" />
             <output name="outputfa" value="Gallus_gallus_RefSeq.fa" />
-            <output name="index_ix" value="Gallus_gallus_RefSeq.ix" />
       </test>
   </tests> 
   <help>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Gallus_gallus_RefSeq.ixx	Mon Nov 06 15:28:55 2017 -0500
@@ -0,0 +1,1 @@
+1    0000000000