Mercurial > repos > yating-l > data_manager_fetch_reference_data
changeset 10:f2e535e1b45c draft
planemo upload
| author | yating-l |
|---|---|
| date | Wed, 03 May 2017 18:24:19 -0400 |
| parents | 877e61138c9c |
| children | 85e817cdf4bd |
| files | data_manager/fetch_reference_data.py |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager/fetch_reference_data.py Wed May 03 18:22:12 2017 -0400 +++ b/data_manager/fetch_reference_data.py Wed May 03 18:24:19 2017 -0400 @@ -50,7 +50,7 @@ glimmerhmm_trained_dir = os.path.join(downloadpath, 'GlimmerHMM', 'trained_dir', sequence_id) glimmerhmm_trained_target_dir = os.path.join(target_directory, sequence_id) shutil.copytree(glimmerhmm_trained_dir, glimmerhmm_trained_target_dir) - data_table_entry = dict(value=sequence_id, name=sequence_name, path=glimmerhmm_trained_target_dir) + data_table_entry = dict(value=sequence_id, name=sequence_name, path=glimmerhmm_trained_target_dir.strip('/')) _add_data_table_entry(data_manager_dict, data_table_entry) cleanup_before_exit('tmp') @@ -70,7 +70,7 @@ filename = args.out params = from_json_string(open(filename).read()) - target_directory = params['output_data'][0]['extra_files_path'].strip('/') + target_directory = params['output_data'][0]['extra_files_path'] os.mkdir(target_directory) data_manager_dict = {}