# HG changeset patch
# User yating-l
# Date 1493850259 14400
# Node ID f2e535e1b45c45330bbd637f85a60512229304c8
# Parent  877e61138c9c7a64f49094a857a931e6b6a60efd
planemo upload

diff -r 877e61138c9c -r f2e535e1b45c data_manager/fetch_reference_data.py
--- a/data_manager/fetch_reference_data.py	Wed May 03 18:22:12 2017 -0400
+++ b/data_manager/fetch_reference_data.py	Wed May 03 18:24:19 2017 -0400
@@ -50,7 +50,7 @@
     glimmerhmm_trained_dir = os.path.join(downloadpath, 'GlimmerHMM', 'trained_dir', sequence_id)
     glimmerhmm_trained_target_dir = os.path.join(target_directory, sequence_id)
     shutil.copytree(glimmerhmm_trained_dir, glimmerhmm_trained_target_dir)
-    data_table_entry = dict(value=sequence_id, name=sequence_name, path=glimmerhmm_trained_target_dir)
+    data_table_entry = dict(value=sequence_id, name=sequence_name, path=glimmerhmm_trained_target_dir.strip('/'))
     _add_data_table_entry(data_manager_dict, data_table_entry)
     
     cleanup_before_exit('tmp')
@@ -70,7 +70,7 @@
     filename = args.out
 
     params = from_json_string(open(filename).read())
-    target_directory = params['output_data'][0]['extra_files_path'].strip('/')
+    target_directory = params['output_data'][0]['extra_files_path']
     os.mkdir(target_directory)
     data_manager_dict = {}