Mercurial > repos > yating-l > data_manager_fetch_reference_data
changeset 16:95f5152ffac4 draft
planemo upload
| author | yating-l |
|---|---|
| date | Thu, 04 May 2017 12:22:29 -0400 |
| parents | 45bcb36d6cfe |
| children | 8acd0b4359cc |
| files | data_manager_conf.xml tool-data/glimmer_hmm.loc.sample |
| diffstat | 2 files changed, 19 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager_conf.xml Thu May 04 12:12:12 2017 -0400 +++ b/data_manager_conf.xml Thu May 04 12:22:29 2017 -0400 @@ -8,9 +8,10 @@ <column name="path" output_ref="out_file"> <move type="directory"> <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH">${value}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH">${value}/${path}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/${path}</value_translation> + <value_translation type="function">abspath</value_translation> </column> </output> </data_table>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/glimmer_hmm.loc.sample Thu May 04 12:22:29 2017 -0400 @@ -0,0 +1,16 @@ +#This file lists the locations of all the trained_dir files +#under the "trained_dir" directory (a directory that contains a directory +#for each organism used by glimmer_hmm). +#This file has the format (white space characters are +#TAB characters): +# +#<unique_id> <display_name> <file_path> +# +#glimmer_hmm.loc could look something like this: +# +#human Human /path/to/trained_dir/human +#celegans Celegan /path/to/trained_dir/Celegans +#arabidopsis Arabidopsis /path/to/trained_dir/arabidopsis +#rice Rice /path/to/trained_dir/rice +#zebrafish Zebrafish /path/to/trained_dir/zebrafish +#