Mercurial > repos > yating-l > data_manager_fetch_reference_data
changeset 9:877e61138c9c draft
planemo upload
| author | yating-l |
|---|---|
| date | Wed, 03 May 2017 18:22:12 -0400 |
| parents | 3d7eee9758ae |
| children | f2e535e1b45c |
| files | data_manager/fetch_reference_data.py data_manager_conf.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/fetch_reference_data.py Wed May 03 18:17:36 2017 -0400 +++ b/data_manager/fetch_reference_data.py Wed May 03 18:22:12 2017 -0400 @@ -70,7 +70,7 @@ filename = args.out params = from_json_string(open(filename).read()) - target_directory = params['output_data'][0]['extra_files_path'] + target_directory = params['output_data'][0]['extra_files_path'].strip('/') os.mkdir(target_directory) data_manager_dict = {}
--- a/data_manager_conf.xml Wed May 03 18:17:36 2017 -0400 +++ b/data_manager_conf.xml Wed May 03 18:22:12 2017 -0400 @@ -8,9 +8,9 @@ <column name="path" output_ref="out_file"> <move type="file"> <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${name}/seq/${path}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${name}/${path}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${name}/seq/${path}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${name}/${path}</value_translation> </column> </output> </data_table>