# HG changeset patch
# User yating-l
# Date 1493850132 14400
# Node ID 877e61138c9c7a64f49094a857a931e6b6a60efd
# Parent  3d7eee9758ae3971247ee506fc06f0e75833f3d6
planemo upload

diff -r 3d7eee9758ae -r 877e61138c9c data_manager/fetch_reference_data.py
--- a/data_manager/fetch_reference_data.py	Wed May 03 18:17:36 2017 -0400
+++ b/data_manager/fetch_reference_data.py	Wed May 03 18:22:12 2017 -0400
@@ -70,7 +70,7 @@
     filename = args.out
 
     params = from_json_string(open(filename).read())
-    target_directory = params['output_data'][0]['extra_files_path']
+    target_directory = params['output_data'][0]['extra_files_path'].strip('/')
     os.mkdir(target_directory)
     data_manager_dict = {}
 
diff -r 3d7eee9758ae -r 877e61138c9c data_manager_conf.xml
--- a/data_manager_conf.xml	Wed May 03 18:17:36 2017 -0400
+++ b/data_manager_conf.xml	Wed May 03 18:22:12 2017 -0400
@@ -8,9 +8,9 @@
                     <column name="path" output_ref="out_file">
                         <move type="file">
                             <source>${path}</source>
-                            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${name}/seq/${path}</target>
+                            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${name}/${path}</target>
                         </move>
-                        <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${name}/seq/${path}</value_translation>
+                        <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${name}/${path}</value_translation>
                     </column>
                 </output>
             </data_table>