Mercurial > repos > yating-l > data_manager_fetch_reference_data

diff data_manager/fetch_reference_data.py @ 3:2804b5f00dc7 draft

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planemo upload
author yating-l
date Wed, 03 May 2017 16:52:09 -0400
parents 5349705442d0
children 464d75111b16
line wrap: on
line diff
--- a/data_manager/fetch_reference_data.py	Wed May 03 16:32:05 2017 -0400
+++ b/data_manager/fetch_reference_data.py	Wed May 03 16:52:09 2017 -0400
@@ -53,9 +53,10 @@
 def main():
     #Parse Command Line
     parser = argparse.ArgumentParser()
+    parser.add_argument('-o', '--out', help='Output file')
     args = parser.parse_args()
 
-    filename = args[0]
+    filename = args.out
 
     params = from_json_string(open(filename).read())
     target_directory = params['output_data'][0]['extra_files_path']