diff schemas/rmsk16.as @ 0:2c58335f1ec8 draft default tip

planemo upload

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/schemas/rmsk16.as	Tue May 16 17:03:13 2017 -0400
@@ -0,0 +1,21 @@
+
+table repeatMasker
+"RepeatMasker .out record"
+    (
+    string chrom;    "Genomic sequence name"
+    uint chromStart;     "Start in genomic sequence"
+    uint chromEnd;       "End in genomic sequence"
+    string name;     "Name of repeat"
+    uint score;       "always 0 place holder"
+    char[1] strand;     "Relative orientation + or -"
+    uint swScore;       "Smith Waterman alignment score"
+    uint milliDiv;      "Base mismatches in parts per thousand"
+    uint milliDel;      "Bases deleted in parts per thousand"
+    uint milliIns;      "Bases inserted in parts per thousand"
+    int  genoLeft;      "-#bases after match in genomic sequence"
+    string repClass;    "Class of repeat"
+    string repFamily;   "Family of repeat"
+    int repStart;       "Start (if strand is +) or -#bases after match (if strand is -) in repeat sequence"
+    uint repEnd;        "End in repeat sequence"
+    int repLeft;        "-#bases after match (if strand is +) or start (if strand is -) in repeat sequence"
+    )