Mercurial > repos > yating-l > bed_to_bigbed_340
comparison schemas/rmsk16.as @ 0:2c58335f1ec8 draft default tip
planemo upload
author | yating-l |
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date | Tue, 16 May 2017 17:03:13 -0400 |
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-1:000000000000 | 0:2c58335f1ec8 |
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2 table repeatMasker | |
3 "RepeatMasker .out record" | |
4 ( | |
5 string chrom; "Genomic sequence name" | |
6 uint chromStart; "Start in genomic sequence" | |
7 uint chromEnd; "End in genomic sequence" | |
8 string name; "Name of repeat" | |
9 uint score; "always 0 place holder" | |
10 char[1] strand; "Relative orientation + or -" | |
11 uint swScore; "Smith Waterman alignment score" | |
12 uint milliDiv; "Base mismatches in parts per thousand" | |
13 uint milliDel; "Bases deleted in parts per thousand" | |
14 uint milliIns; "Bases inserted in parts per thousand" | |
15 int genoLeft; "-#bases after match in genomic sequence" | |
16 string repClass; "Class of repeat" | |
17 string repFamily; "Family of repeat" | |
18 int repStart; "Start (if strand is +) or -#bases after match (if strand is -) in repeat sequence" | |
19 uint repEnd; "End in repeat sequence" | |
20 int repLeft; "-#bases after match (if strand is +) or start (if strand is -) in repeat sequence" | |
21 ) |