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1 table simpleRepeat
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2 "Describes the Simple Tandem Repeats"
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3 (
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4 string chrom; "Reference sequence chromosome or scaffold"
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5 uint chromStart; "Start position in chromosome"
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6 uint chromEnd; "End position in chromosome"
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7 string name; "Simple Repeats tag name"
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8 uint period; "Length of repeat unit"
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9 float copyNum; "Mean number of copies of repeat"
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10 uint consensusSize; "Length of consensus sequence"
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11 uint perMatch; "Percentage Match"
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12 uint perIndel; "Percentage Indel"
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13 uint score; "Alignment Score = 2*match-7*mismatch-7*indel; minscore=50"
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14 uint A; "Percent of A's in repeat unit"
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15 uint C; "Percent of C's in repeat unit"
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16 uint G; "Percent of G's in repeat unit"
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17 uint T; "Percent of T's in repeat unit"
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18 float entropy; "Entropy"
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19 lstring sequence; "Sequence of repeat unit element"
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20 )
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