Mercurial > repos > ximgchess > chap_test_20230411
changeset 40:eef6fd513736 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit eda217fb0afe5af50380a24b578c668db9c004f4-dirty
author | ximgchess |
---|---|
date | Wed, 12 Apr 2023 14:25:59 +0000 |
parents | d0d62ad6daa4 |
children | a3e7311a25f4 |
files | tomo/.tomo_reduce.xml.swp tomo/tomo_reduce.xml |
diffstat | 2 files changed, 2 insertions(+), 13 deletions(-) [+] |
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--- a/tomo/tomo_reduce.xml Wed Apr 12 14:22:57 2023 +0000 +++ b/tomo/tomo_reduce.xml Wed Apr 12 14:25:59 2023 +0000 @@ -6,20 +6,13 @@ <expand macro="requirements"/> <command detect_errors="exit_code"> <![CDATA[ - mkdir tomo_reduce_plots; pip --exists-action i install --target='/nfs/chess/galaxy-dev/var/dependencies/_conda/envs' certif-pyspec==1.5.3 #if str($map.type_selector) == "yaml" cp $input_file map.yaml && - cat $__tool_directory__/andor2.yaml $tool_config > reduce.yaml && + cat $__tool_directory__/andor2.yaml $tool_config > reduce.yaml #else cp $input_file setup.nex && - cp $tool_config reduce.yaml && - #end if - CHAP --config - #if str($map.type_selector) == "yaml" - $__tool_directory__/pipeline_reduce_yaml.yaml - #else - $__tool_directory__/pipeline_reduce_nexus.yaml + cp $tool_config reduce.yaml #end if ]]> </command> @@ -80,10 +73,6 @@ </inputs> <outputs> <data name="tool_config" format="yaml" label="Tool config" from_work_dir="reduce.yaml" hidden="false"/> - <collection name="tomo_reduce_plots" type="list" label="Data reduction images"> - <discover_datasets pattern="__name_and_ext__" directory="tomo_reduce_plots"/> - </collection> - <data name="output_file" format="nex" label="Reduced tomography data" from_work_dir="output.nex"/> </outputs> <help> <![CDATA[